Parental gene:

RPS20, ENSBTAG00000019147

Aliases:None
Description:40S ribosomal protein S20 [Source:UniProtKB/Swiss-Prot;Acc:Q3ZBH8]
Organism:Cow (Bos taurus)
Coordinates:14:24955078..24956324(-)


>ENSBTAG00000019147
ATGGCCTTTAAAGACACCGGCAAGACTCCCGTGGAGCCAGAGGTGGCCATTCACCGGATTAGGATCACCCTCACCAGCCG
CAACGTGAAGTCTCTGGAGAAGGTGTGTGCTGACCTGATCAGAGGCGCGAAGGAAAAGAATCTCAAAGTGAAAGGACCAG
TTCGGATGCCTACCAAGACTCTGAGAATAACTACGAGGAAAACTCCTTGTGGTGAAGGTTCTAAGACTTGGGATCGATTC
CAAATGAGGATCCACAAGCGACTCATTGACCTGCACAGTCCTTCTGAAATTGTCAAGCAGATCACTTCCATCAGTATTGA
GCCGGGAGTCGAGGTGGAAGTCACCATTGCTGATGCCTAA

Library Parental gene expression (RPM)
SRP017611_brain 45 .82 RPM
SRP017611_kidney 166 .26 RPM
SRP017611_liver 145 .81 RPM
ERP005899_muscle 974 .54 RPM
ERP005899_liver 150 .18 RPM
SRP030211_testis 105 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000029884 ortholog_one2one 20 retrogenes
Callithrix jacchus ENSCJAG00000016631 ortholog_one2one 4 retrogenes
Dipodomys ordii ENSDORG00000005794 ortholog_one2one 2 retrogenes
Echinops telfairi ENSETEG00000003394 possible_ortholog 3 retrogenes
Felis catus ENSFCAG00000029233 ortholog_one2one 22 retrogenes
Homo sapiens ENSG00000008988 ortholog_one2one 26 retrogenes
Gorilla gorilla ENSGGOG00000001837 ortholog_one2one 21 retrogenes
Macropus eugenii ENSMEUG00000014171 ortholog_one2one 21 retrogenes
Monodelphis domestica ENSMODG00000009114 ortholog_one2one 6 retrogenes
Mustela putorius furo ENSMPUG00000010452 possible_ortholog 15 retrogenes
Mus musculus ENSMUSG00000028234 ortholog_one2one 7 retrogenes
Nomascus leucogenys ENSNLEG00000001214 possible_ortholog 19 retrogenes
Oryctolagus cuniculus ENSOCUG00000003068 ortholog_one2one 17 retrogenes
Otolemur garnettii ENSOGAG00000007760 ortholog_one2one 10 retrogenes
Ochotona princeps ENSOPRG00000011042 ortholog_one2one 11 retrogenes
Procavia capensis ENSPCAG00000004300 ortholog_one2one 3 retrogenes
Pongo abelii ENSPPYG00000018600 ortholog_one2one 30 retrogenes
Pan troglodytes ENSPTRG00000020264 ortholog_one2one 27 retrogenes
Rattus norvegicus ENSRNOG00000008555 ortholog_one2many 7 retrogenes
Sarcophilus harrisii ENSSHAG00000011200 ortholog_one2one 10 retrogenes
Sus scrofa ENSSSCG00000006249 ortholog_one2one 12 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_454 97.48 100.00
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2. retro_btau_632 79.83 100.00
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3. retro_btau_1082 89.92 99.16
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4. retro_btau_1086 65.77 91.60
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5. retro_btau_1250 72.50 100.00
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6. retro_btau_1272 80.83 98.32
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7. retro_btau_1274 71.90 100.00
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8. retro_btau_1419 78.15 100.00
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9. retro_btau_1526 60.00 84.87
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10. retro_btau_1789 72.41 72.27
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11. retro_btau_1818 85.71 100.00
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Download FASTA sequences of all ENSBTAG00000019147 retrocopies