RetrogeneDB ID: | retro_btau_1419 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 5:44886448..44886802(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000002741 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSBTAG00000019147 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S20 [Source:UniProtKB/Swiss-Prot;Acc:Q3ZBH8] |
Percent Identity: | 78.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPC |
MA.KDTGKTPV.P..AIH.IR.TLTSRN.K.LEK.CADLIR.AKEK.LKVKG.V.MPTKTLR..TRKTPC | |
Retrocopy | MACKDTGKTPVKPDMAIHQIRTTLTSRNLKFLEKACADLIRVAKEKSLKVKGWVWMPTKTLRV-TRKTPC |
Parental | GEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA |
.EGSKTWD.F.MR..K.LIDL.SPSEIVKQITSI.IEP.V.VEV.IADA | |
Retrocopy | DEGSKTWDHFEMRVLKQLIDLYSPSEIVKQITSIIIEPAVKVEVYIADA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 150 .18 RPM |
ERP005899_muscle | 0 .00 RPM | 974 .54 RPM |
SRP017611_brain | 0 .00 RPM | 45 .82 RPM |
SRP017611_kidney | 0 .00 RPM | 166 .26 RPM |
SRP017611_liver | 0 .00 RPM | 145 .81 RPM |
SRP030211_testis | 0 .01 RPM | 105 .59 RPM |