RetrogeneDB ID: | retro_pabe_885 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 12:122424680..122425012(+) | ||
Located in intron of: | ENSPPYG00000005023 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSPPYG00000018600 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 [Source:HGNC Symbol;Acc:10405] |
Percent Identity: | 74.11 % |
Parental protein coverage: | 93.28 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVK-GPVRMPTKTLRITTRKTPCGEGSKT |
K..VE.EVAI..IRITL...N.KSLEKVCADLIRGAKEKNLKVK.G.VRMPTKTLRIT.RKTP.GEGS.T | |
Retrocopy | KPSVELEVAIY*IRITLACHNIKSLEKVCADLIRGAKEKNLKVK<GSVRMPTKTLRITIRKTPRGEGSRT |
Parental | WDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD |
.DRFQMRIHK.L.DL..P.EI.KQITSI..E....V.VT.AD | |
Retrocopy | SDRFQMRIHK*LTDLDGPPEIAKQITSICTELRFKVKVTTAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 91 .06 RPM |
SRP007412_cerebellum | 0 .24 RPM | 60 .68 RPM |
SRP007412_heart | 0 .00 RPM | 97 .78 RPM |
SRP007412_kidney | 0 .07 RPM | 173 .72 RPM |
SRP007412_liver | 0 .15 RPM | 152 .92 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1062 |
Pan troglodytes | retro_ptro_723 |
Gorilla gorilla | retro_ggor_838 |