RetrogeneDB ID: | retro_fcat_1503 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D2:27798593..27798889(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSFCAG00000029233 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 [Source:HGNC Symbol;Acc:10405] |
Percent Identity: | 73. % |
Parental protein coverage: | 83.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | IRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTW-DRFQMRIHKRL |
.RITLTS..VKSLE.V.ADLIRG.K.KNLKVKG.V.MPTKT.RITTRK.P.GEGSKTW...FQ.RIHK.L | |
Retrocopy | VRITLTSQTVKSLEVVPADLIRGTKTKNLKVKGTVQMPTKTPRITTRKIPRGEGSKTW<GHFQVRIHKQL |
Parental | IDLHSPSEIVKQITSISIEPGVEVEVTIAD |
IDL.SPS.I.KQI.S.SI..GVE.EV..AD | |
Retrocopy | IDLQSPSKIGKQIISTSIDSGVEDEVITAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 55 .09 RPM |
SRP017611_kidney | 0 .00 RPM | 171 .18 RPM |
SRP017611_liver | 0 .00 RPM | 76 .53 RPM |