RetrogeneDB ID: | retro_btau_1272 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 3:45646654..45647002(-) | ||
Located in intron of: | ENSBTAG00000031358 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSBTAG00000019147 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S20 [Source:UniProtKB/Swiss-Prot;Acc:Q3ZBH8] |
Percent Identity: | 80.83 % |
Parental protein coverage: | 98.32 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | AFKDTGKTPVEP-EVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTP- |
AFKDTGKTP.EP..VAIH.I.ITLT.RNVKSLEKVCADLIRGAKE.NL.VKG.V.MPTKTLRITTRKTP. | |
Retrocopy | AFKDTGKTPMEP<SVAIHQIKITLTGRNVKSLEKVCADLIRGAKEMNLIVKGQVWMPTKTLRITTRKTP< |
Parental | CGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIE-PGVEVEVTIAD |
CGEGSKTW..FQM.IHK..IDLHSPSE.VK.ITS.SI..PGV.VEVTIA. | |
Retrocopy | CGEGSKTWAPFQMKIHK*FIDLHSPSETVKKITSFSID<PGVKVEVTIAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 150 .18 RPM |
ERP005899_muscle | 0 .00 RPM | 974 .54 RPM |
SRP017611_brain | 0 .05 RPM | 45 .82 RPM |
SRP017611_kidney | 0 .06 RPM | 166 .26 RPM |
SRP017611_liver | 0 .00 RPM | 145 .81 RPM |
SRP030211_testis | 0 .01 RPM | 105 .59 RPM |