RetrogeneDB ID: | retro_fcat_646 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:119272033..119272383(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSFCAG00000029233 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 [Source:HGNC Symbol;Acc:10405] |
Percent Identity: | 70.49 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEK-NLKVKGPVRMPTKTLRITTRKTP |
.A.KDT.KTP.EPE..IH.IRITLTS..V...E.VC..L....KEK.NLKVKGPV.MPTKTLRITTRK.. | |
Retrocopy | VALKDTRKTPLEPEIVIHQIRITLTSPKVNG-ESVC-*LDQRHKEK>NLKVKGPVWMPTKTLRITTRKIS |
Parental | CGEGSK-TWDRFQMRIHKRLIDLHSPSE-IVKQITSISIEPGVEVEVTIADA |
.GEG...TWD.FQMRIHK..IDL.SPS..IVKQITS.SIE.G.EVEVTIADA | |
Retrocopy | *GEGFR<TWDHFQMRIHKQFIDLYSPSG<IVKQITSMSIETGIEVEVTIADA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 55 .09 RPM |
SRP017611_kidney | 0 .00 RPM | 171 .18 RPM |
SRP017611_liver | 0 .00 RPM | 76 .53 RPM |