RetrogeneDB ID: | retro_opri_1206 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_9478:79072..79312(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSOPRG00000011042 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 [Source:HGNC Symbol;Acc:10405] |
Percent Identity: | 57.32 % |
Parental protein coverage: | 67.23 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | LTSRNVKSLEK-VCADLIRGAKEKNLKVKGPVRMPTKTLRITTR-KTPCGEGSKTWDRFQMRIHKRLIDL |
LT....K..EK.VCAD.I.GA...NLKV.GPV...T..L.IT.R.KT.C.EGSKT.D.F.MR.HK...DL | |
Retrocopy | LTYKSRKDPEK<VCADSIKGAIKNNLKVNGPVQITTTSL*ITNR>KTNCDEGSKTRDWFPMRTHK*HQDL |
Parental | HSPSEIVKQITS |
HS.S.IVK...S | |
Retrocopy | HSSSAIVKLLPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |