RetrogeneDB ID: | retro_fcat_1476 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D2:29976172..29976521(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSFCAG00000029233 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 [Source:HGNC Symbol;Acc:10405] |
Percent Identity: | 75. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKT-LRITTRKTP |
MAFK..G.TP...E..IHRIRITLT..N.KS...V.A.L.RG.KEKNLK.KGPV.MPTKT.LRITTRK.P | |
Retrocopy | MAFKYMGRTPMKTE--IHRIRITLTNQNIKSW*EVHANLVRGTKEKNLKGKGPVQMPTKT>LRITTRKIP |
Parental | CGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA |
.GEGSKTWD.FQ.RIHK.LIDLHSPSEI.KQI.SIS.EPGV.VEVTIADA | |
Retrocopy | RGEGSKTWDHFQVRIHK-LIDLHSPSEIGKQIISISTEPGVKVEVTIADA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 55 .09 RPM |
SRP017611_kidney | 0 .00 RPM | 171 .18 RPM |
SRP017611_liver | 0 .00 RPM | 76 .53 RPM |