RetrogeneDB ID: | retro_pabe_1248 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 15:47074475..47074833(+) | ||
Located in intron of: | ENSPPYG00000006469 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSPPYG00000018600 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 [Source:HGNC Symbol;Acc:10405] |
Percent Identity: | 82.5 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAFKDTGKTPVEPEVAIHRIRITL-TSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTP |
.AFKDTGKTPVEPE.AIH.IRITL..S...KSLEKVCADLIRGAK.KNLKVKGPV.MPTKT.RI.TRKTP | |
Retrocopy | VAFKDTGKTPVEPEIAIH*IRITL>MSHSIKSLEKVCADLIRGAKKKNLKVKGPVQMPTKTSRIATRKTP |
Parental | CGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA |
.G.GSKTWD.FQMRI.K.LIDLH..SEIVKQITSISIEPGV.VEVTI.DA | |
Retrocopy | FGDGSKTWDHFQMRIRKQLIDLHILSEIVKQITSISIEPGVKVEVTIGDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 91 .06 RPM |
SRP007412_cerebellum | 0 .24 RPM | 60 .68 RPM |
SRP007412_heart | 0 .12 RPM | 97 .78 RPM |
SRP007412_kidney | 0 .27 RPM | 173 .72 RPM |
SRP007412_liver | 0 .06 RPM | 152 .92 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1497 |
Pan troglodytes | retro_ptro_1016 |
Gorilla gorilla | retro_ggor_1149 |
Callithrix jacchus | retro_cjac_667 |