Parental gene:

PPIA, ENSPTRG00000023064

Aliases:None
Description:Peptidyl-prolyl cis-trans isomerase A [Source:UniProtKB/Swiss-Prot;Acc:Q0ZQL1]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:7:43463628..43470129(+)


>ENSPTRG00000023064
ATGGTCAACCCCACCGTGTTCTTCGACATTGCCGTCGACGGCGAGCCCTTGGGCCGCGTCTCCTTTGAGCTGTTTGCAGA
CAAGGTCCCAAAGACAGCAGAAAATTTTCGTGCTCTGAGCACTGGAGAGAAAGGATTTGGTTATAAGGGTTCCTGCTTTC
ACAGAATTATTCCAGGGTTTATGTGTCAGGGTGGTGACTTCACACGCCATAATGGCACTGGTGGCAAGTCCATCTATGGG
GAGAAATTTGAAGATGAGAACTTCATCCTAAAGCATACAGGTCCTGGCATCTTGTCCATGGCAAATGCTGGACCCAATAC
AAATGGTTCCCAGTTTTTCATCTGCACTGCCAAGACTGAGTGGTTGGATGGCAAGCATGTGGTATTTGGCAAAGTGAAAG
AAGGCATGAATATTGTGGAGGCCATGGAGCGCTTTGGGTCCAGGAATGGCAAGACCAGCAAGAAGATCACCATTGCTGAC
TGTGGACAACTCGAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 473 .80 RPM
SRP007412_cerebellum 137 .73 RPM
SRP007412_heart 52 .38 RPM
SRP007412_kidney 185 .81 RPM
SRP007412_liver 155 .29 RPM
SRP007412_testis 52 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012003 possible_ortholog 12 retrogenes
retro_btau_1005, retro_btau_1448, retro_btau_155, retro_btau_1696, retro_btau_1806, retro_btau_272, retro_btau_334, retro_btau_335, retro_btau_345, retro_btau_414, retro_btau_751, retro_btau_934,
Callithrix jacchus ENSCJAG00000011969 possible_ortholog 54 retrogenes
retro_cjac_1065, retro_cjac_1080, retro_cjac_1083, retro_cjac_1092, retro_cjac_1097, retro_cjac_11, retro_cjac_1193, retro_cjac_1213, retro_cjac_1310, retro_cjac_1326, retro_cjac_1347, retro_cjac_1451, retro_cjac_147, retro_cjac_1678, retro_cjac_1710, retro_cjac_1760, retro_cjac_1782, retro_cjac_1982, retro_cjac_1989, retro_cjac_2043, retro_cjac_2060, retro_cjac_2062, retro_cjac_2118, retro_cjac_2286, retro_cjac_2327, retro_cjac_2376, retro_cjac_2425, retro_cjac_2426, retro_cjac_2479, retro_cjac_2540, retro_cjac_2688, retro_cjac_2863, retro_cjac_2881, retro_cjac_2977, retro_cjac_3073, retro_cjac_3077, retro_cjac_3101, retro_cjac_3196, retro_cjac_384, retro_cjac_4202, retro_cjac_4203, retro_cjac_501, retro_cjac_646, retro_cjac_649, retro_cjac_695, retro_cjac_704, retro_cjac_710, retro_cjac_714, retro_cjac_717, retro_cjac_755, retro_cjac_827, retro_cjac_834, retro_cjac_871, retro_cjac_971,
Echinops telfairi ENSETEG00000002186 possible_ortholog 21 retrogenes
retro_etel_115, retro_etel_1188, retro_etel_1292, retro_etel_1322, retro_etel_1670, retro_etel_1827, retro_etel_1875, retro_etel_1886, retro_etel_208, retro_etel_25, retro_etel_288, retro_etel_371, retro_etel_430, retro_etel_447, retro_etel_485, retro_etel_537, retro_etel_551, retro_etel_568, retro_etel_595, retro_etel_937, retro_etel_998,
Gorilla gorilla ENSGGOG00000026298 possible_ortholog 4 retrogenes
retro_ggor_138, retro_ggor_15, retro_ggor_165, retro_ggor_28,
Macropus eugenii ENSMEUG00000002016 possible_ortholog 20 retrogenes
retro_meug_1024, retro_meug_1055, retro_meug_1089, retro_meug_1133, retro_meug_1269, retro_meug_1391, retro_meug_1576, retro_meug_1746, retro_meug_1880, retro_meug_1975, retro_meug_2013, retro_meug_2037, retro_meug_260, retro_meug_297, retro_meug_301, retro_meug_437, retro_meug_478, retro_meug_510, retro_meug_713, retro_meug_73,
Macaca mulatta ENSMMUG00000016638 ortholog_one2many 10 retrogenes
retro_mmul_1, retro_mmul_13, retro_mmul_132, retro_mmul_141, retro_mmul_161, retro_mmul_195, retro_mmul_245, retro_mmul_5, retro_mmul_56, retro_mmul_8,
Monodelphis domestica ENSMODG00000016089 possible_ortholog 9 retrogenes
retro_mdom_1373, retro_mdom_1524, retro_mdom_1856, retro_mdom_1884, retro_mdom_215, retro_mdom_272, retro_mdom_29, retro_mdom_730, retro_mdom_85,
Mus musculus ENSMUSG00000071866 ortholog_one2many 2 retrogenes
retro_mmus_242, retro_mmus_285,
Oryctolagus cuniculus ENSOCUG00000016662 possible_ortholog 3 retrogenes
retro_ocun_113, retro_ocun_1406, retro_ocun_237,
Otolemur garnettii ENSOGAG00000027997 possible_ortholog 31 retrogenes
retro_ogar_1090, retro_ogar_1201, retro_ogar_1305, retro_ogar_1329, retro_ogar_1336, retro_ogar_1562, retro_ogar_1634, retro_ogar_1741, retro_ogar_1889, retro_ogar_1893, retro_ogar_1920, retro_ogar_1973, retro_ogar_1974, retro_ogar_1999, retro_ogar_21, retro_ogar_2246, retro_ogar_2265, retro_ogar_2397, retro_ogar_2401, retro_ogar_2440, retro_ogar_2484, retro_ogar_2794, retro_ogar_2907, retro_ogar_2924, retro_ogar_2938, retro_ogar_2948, retro_ogar_3072, retro_ogar_3187, retro_ogar_3210, retro_ogar_357, retro_ogar_743,
Pongo abelii ENSPPYG00000017586 ortholog_one2many 12 retrogenes
retro_pabe_1065, retro_pabe_1330, retro_pabe_186, retro_pabe_221, retro_pabe_2267, retro_pabe_2469, retro_pabe_2633, retro_pabe_2730, retro_pabe_2812, retro_pabe_3474, retro_pabe_631, retro_pabe_995,
Pongo abelii ENSPPYG00000017587 possible_ortholog 4 retrogenes
retro_pabe_1118, retro_pabe_2202, retro_pabe_3311, retro_pabe_3602,
Pan troglodytes ENSPTRG00000002669 other_paralog 1 retrogene
retro_ptro_979,
Rattus norvegicus ENSRNOG00000006423 ortholog_one2many 2 retrogenes
retro_rnor_360, retro_rnor_387,
Sarcophilus harrisii ENSSHAG00000017062 possible_ortholog 3 retrogenes
retro_shar_164, retro_shar_383, retro_shar_750,
Ictidomys tridecemlineatus ENSSTOG00000010215 possible_ortholog 10 retrogenes
retro_itri_1073, retro_itri_1576, retro_itri_1683, retro_itri_1897, retro_itri_499, retro_itri_667, retro_itri_7, retro_itri_731, retro_itri_802, retro_itri_978,
Tupaia belangeri ENSTBEG00000017484 ortholog_one2one 77 retrogenes
retro_tbel_1014, retro_tbel_1098, retro_tbel_1104, retro_tbel_1106, retro_tbel_1180, retro_tbel_1661, retro_tbel_1689, retro_tbel_1808, retro_tbel_1813, retro_tbel_1831, retro_tbel_1895, retro_tbel_1904, retro_tbel_1913, retro_tbel_1918, retro_tbel_1936, retro_tbel_1938, retro_tbel_2013, retro_tbel_2014, retro_tbel_204, retro_tbel_2054, retro_tbel_2098, retro_tbel_2144, retro_tbel_2175, retro_tbel_221, retro_tbel_2557, retro_tbel_267, retro_tbel_2681, retro_tbel_2691, retro_tbel_2714, retro_tbel_2824, retro_tbel_2834, retro_tbel_2851, retro_tbel_2897, retro_tbel_2938, retro_tbel_3004, retro_tbel_3054, retro_tbel_3104, retro_tbel_3142, retro_tbel_3153, retro_tbel_3311, retro_tbel_3337, retro_tbel_3421, retro_tbel_3423, retro_tbel_3477, retro_tbel_3639, retro_tbel_3691, retro_tbel_3767, retro_tbel_3847, retro_tbel_3880, retro_tbel_3890, retro_tbel_3979, retro_tbel_4019, retro_tbel_415, retro_tbel_4155, retro_tbel_4325, retro_tbel_4332, retro_tbel_4364, retro_tbel_4391, retro_tbel_4534, retro_tbel_4537, retro_tbel_4568, retro_tbel_4581, retro_tbel_4683, retro_tbel_4699, retro_tbel_521, retro_tbel_541, retro_tbel_618, retro_tbel_64, retro_tbel_764, retro_tbel_80, retro_tbel_831, retro_tbel_832, retro_tbel_887, retro_tbel_900, retro_tbel_910, retro_tbel_922, retro_tbel_946,
Tarsius syrichta ENSTSYG00000008973 possible_ortholog 23 retrogenes
retro_tsyr_1106, retro_tsyr_1266, retro_tsyr_1277, retro_tsyr_1530, retro_tsyr_1643, retro_tsyr_1816, retro_tsyr_1909, retro_tsyr_2040, retro_tsyr_2072, retro_tsyr_2097, retro_tsyr_388, retro_tsyr_400, retro_tsyr_408, retro_tsyr_430, retro_tsyr_459, retro_tsyr_478, retro_tsyr_481, retro_tsyr_507, retro_tsyr_641, retro_tsyr_705, retro_tsyr_760, retro_tsyr_847, retro_tsyr_924,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_195 86.50 98.79
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2. retro_ptro_210 75.00 99.39
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3. retro_ptro_278 81.71 99.39
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4. retro_ptro_293 85.98 99.39
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5. retro_ptro_326 81.21 99.39
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6. retro_ptro_394 78.18 98.79
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7. retro_ptro_458 74.32 87.88
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8. retro_ptro_472 80.68 53.33
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9. retro_ptro_477 95.15 100.00
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10. retro_ptro_498 82.24 91.52
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11. retro_ptro_518 77.11 50.30
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12. retro_ptro_521 87.88 100.00
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13. retro_ptro_527 76.27 70.91
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14. retro_ptro_541 70.73 99.39
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15. retro_ptro_567 89.70 99.39
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16. retro_ptro_585 90.91 99.39
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17. retro_ptro_783 86.59 99.39
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18. retro_ptro_825 82.65 57.58
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19. retro_ptro_853 71.69 100.00
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20. retro_ptro_879 84.34 100.00
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21. retro_ptro_889 82.64 73.33
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22. retro_ptro_905 81.21 98.18
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23. retro_ptro_921 72.88 70.30
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24. retro_ptro_1116 71.22 83.64
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25. retro_ptro_1122 83.64 100.00
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26. retro_ptro_1124 85.26 94.55
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27. retro_ptro_1213 85.45 99.39
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28. retro_ptro_1277 68.80 73.94
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29. retro_ptro_1328 84.67 90.91
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30. retro_ptro_1377 87.73 98.79
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31. retro_ptro_1399 86.67 100.00
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32. retro_ptro_1401 85.37 99.39
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33. retro_ptro_1423 87.42 96.36
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34. retro_ptro_1449 98.18 100.00
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35. retro_ptro_1463 79.41 61.82
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36. retro_ptro_1529 86.59 99.39
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37. retro_ptro_1531 87.35 100.00
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38. retro_ptro_1544 67.89 64.85
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39. retro_ptro_1596 76.36 97.58
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40. retro_ptro_1626 84.54 58.18
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41. retro_ptro_1639 87.80 99.39
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42. retro_ptro_1672 73.91 69.09
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43. retro_ptro_1717 88.48 100.00
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44. retro_ptro_1779 88.81 80.61
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45. retro_ptro_1787 81.34 80.61
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46. retro_ptro_1835 75.30 98.79
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47. retro_ptro_1843 86.59 99.39
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48. retro_ptro_1889 78.34 93.94
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49. retro_ptro_1890 85.98 99.39
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50. retro_ptro_1891 81.34 80.61
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51. retro_ptro_1916 88.28 77.58
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52. retro_ptro_1925 86.13 83.03
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53. retro_ptro_1952 80.95 100.00
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54. retro_ptro_2012 72.27 70.91
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55. retro_ptro_2014 85.71 72.12
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56. retro_ptro_2136 83.90 71.52
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57. retro_ptro_2138 95.76 100.00
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58. retro_ptro_2161 85.45 98.79
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59. retro_ptro_2260 86.06 99.39
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60. retro_ptro_2272 85.89 98.79
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61. retro_ptro_2425 88.29 67.27
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62. retro_ptro_2546 79.46 67.27
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63. retro_ptro_2562 64.22 65.45
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64. retro_ptro_2611 82.46 69.09
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65. retro_ptro_2642 88.48 99.39
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66. retro_ptro_2663 80.67 90.91
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67. retro_ptro_2689 81.88 89.70
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68. retro_ptro_2692 80.00 99.39
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69. retro_ptro_2806 88.55 99.39
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70. retro_ptro_2899 89.13 83.03
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71. retro_ptro_2904 79.50 96.97
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72. retro_ptro_2914 74.65 86.06
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73. retro_ptro_2945 87.88 100.00
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74. retro_ptro_2967 84.57 98.18
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75. retro_ptro_3010 98.79 100.00
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76. retro_ptro_3033 89.51 98.18
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77. retro_ptro_3049 82.61 96.97
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Download FASTA sequences of all ENSPTRG00000023064 retrocopies