Parental gene:

PPIA, ENSPTRG00000023064

Aliases:None
Description:Peptidyl-prolyl cis-trans isomerase A [Source:UniProtKB/Swiss-Prot;Acc:Q0ZQL1]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:7:43463628..43470129(+)


>ENSPTRG00000023064
ATGGTCAACCCCACCGTGTTCTTCGACATTGCCGTCGACGGCGAGCCCTTGGGCCGCGTCTCCTTTGAGCTGTTTGCAGA
CAAGGTCCCAAAGACAGCAGAAAATTTTCGTGCTCTGAGCACTGGAGAGAAAGGATTTGGTTATAAGGGTTCCTGCTTTC
ACAGAATTATTCCAGGGTTTATGTGTCAGGGTGGTGACTTCACACGCCATAATGGCACTGGTGGCAAGTCCATCTATGGG
GAGAAATTTGAAGATGAGAACTTCATCCTAAAGCATACAGGTCCTGGCATCTTGTCCATGGCAAATGCTGGACCCAATAC
AAATGGTTCCCAGTTTTTCATCTGCACTGCCAAGACTGAGTGGTTGGATGGCAAGCATGTGGTATTTGGCAAAGTGAAAG
AAGGCATGAATATTGTGGAGGCCATGGAGCGCTTTGGGTCCAGGAATGGCAAGACCAGCAAGAAGATCACCATTGCTGAC
TGTGGACAACTCGAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 473 .80 RPM
SRP007412_cerebellum 137 .73 RPM
SRP007412_heart 52 .38 RPM
SRP007412_kidney 185 .81 RPM
SRP007412_liver 155 .29 RPM
SRP007412_testis 52 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012003 possible_ortholog 12 retrogenes
Callithrix jacchus ENSCJAG00000011969 possible_ortholog 54 retrogenes
Echinops telfairi ENSETEG00000002186 possible_ortholog 21 retrogenes
Gorilla gorilla ENSGGOG00000026298 possible_ortholog 4 retrogenes
Macropus eugenii ENSMEUG00000002016 possible_ortholog 20 retrogenes
Macaca mulatta ENSMMUG00000016638 ortholog_one2many 10 retrogenes
Monodelphis domestica ENSMODG00000016089 possible_ortholog 9 retrogenes
Mus musculus ENSMUSG00000071866 ortholog_one2many 2 retrogenes
Oryctolagus cuniculus ENSOCUG00000016662 possible_ortholog 3 retrogenes
Otolemur garnettii ENSOGAG00000027997 possible_ortholog 31 retrogenes
Pongo abelii ENSPPYG00000017586 ortholog_one2many 12 retrogenes
Pongo abelii ENSPPYG00000017587 possible_ortholog 4 retrogenes
Pan troglodytes ENSPTRG00000002669 other_paralog 1 retrogene
Rattus norvegicus ENSRNOG00000006423 ortholog_one2many 2 retrogenes
Sarcophilus harrisii ENSSHAG00000017062 possible_ortholog 3 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000010215 possible_ortholog 10 retrogenes
Tupaia belangeri ENSTBEG00000017484 ortholog_one2one 77 retrogenes
Tarsius syrichta ENSTSYG00000008973 possible_ortholog 23 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_195 86.50 98.79
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2. retro_ptro_210 75.00 99.39
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3. retro_ptro_278 81.71 99.39
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4. retro_ptro_293 85.98 99.39
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5. retro_ptro_326 81.21 99.39
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6. retro_ptro_394 78.18 98.79
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7. retro_ptro_458 74.32 87.88
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8. retro_ptro_472 80.68 53.33
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9. retro_ptro_477 95.15 100.00
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10. retro_ptro_498 82.24 91.52
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11. retro_ptro_518 77.11 50.30
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12. retro_ptro_521 87.88 100.00
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13. retro_ptro_527 76.27 70.91
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14. retro_ptro_541 70.73 99.39
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15. retro_ptro_567 89.70 99.39
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16. retro_ptro_585 90.91 99.39
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17. retro_ptro_783 86.59 99.39
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18. retro_ptro_825 82.65 57.58
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19. retro_ptro_853 71.69 100.00
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20. retro_ptro_879 84.34 100.00
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21. retro_ptro_889 82.64 73.33
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22. retro_ptro_905 81.21 98.18
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23. retro_ptro_921 72.88 70.30
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24. retro_ptro_1116 71.22 83.64
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25. retro_ptro_1122 83.64 100.00
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26. retro_ptro_1124 85.26 94.55
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27. retro_ptro_1213 85.45 99.39
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28. retro_ptro_1277 68.80 73.94
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29. retro_ptro_1328 84.67 90.91
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30. retro_ptro_1377 87.73 98.79
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31. retro_ptro_1399 86.67 100.00
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32. retro_ptro_1401 85.37 99.39
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33. retro_ptro_1423 87.42 96.36
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34. retro_ptro_1449 98.18 100.00
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35. retro_ptro_1463 79.41 61.82
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36. retro_ptro_1529 86.59 99.39
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37. retro_ptro_1531 87.35 100.00
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38. retro_ptro_1544 67.89 64.85
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39. retro_ptro_1596 76.36 97.58
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40. retro_ptro_1626 84.54 58.18
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41. retro_ptro_1639 87.80 99.39
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42. retro_ptro_1672 73.91 69.09
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43. retro_ptro_1717 88.48 100.00
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44. retro_ptro_1779 88.81 80.61
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45. retro_ptro_1787 81.34 80.61
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46. retro_ptro_1835 75.30 98.79
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47. retro_ptro_1843 86.59 99.39
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48. retro_ptro_1889 78.34 93.94
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49. retro_ptro_1890 85.98 99.39
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50. retro_ptro_1891 81.34 80.61
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51. retro_ptro_1916 88.28 77.58
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52. retro_ptro_1925 86.13 83.03
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53. retro_ptro_1952 80.95 100.00
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54. retro_ptro_2012 72.27 70.91
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55. retro_ptro_2014 85.71 72.12
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56. retro_ptro_2136 83.90 71.52
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57. retro_ptro_2138 95.76 100.00
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58. retro_ptro_2161 85.45 98.79
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59. retro_ptro_2260 86.06 99.39
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60. retro_ptro_2272 85.89 98.79
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61. retro_ptro_2425 88.29 67.27
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62. retro_ptro_2546 79.46 67.27
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63. retro_ptro_2562 64.22 65.45
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64. retro_ptro_2611 82.46 69.09
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65. retro_ptro_2642 88.48 99.39
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66. retro_ptro_2663 80.67 90.91
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67. retro_ptro_2689 81.88 89.70
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68. retro_ptro_2692 80.00 99.39
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69. retro_ptro_2806 88.55 99.39
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70. retro_ptro_2899 89.13 83.03
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71. retro_ptro_2904 79.50 96.97
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72. retro_ptro_2914 74.65 86.06
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73. retro_ptro_2945 87.88 100.00
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74. retro_ptro_2967 84.57 98.18
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75. retro_ptro_3010 98.79 100.00
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76. retro_ptro_3033 89.51 98.18
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77. retro_ptro_3049 82.61 96.97
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Download FASTA sequences of all ENSPTRG00000023064 retrocopies