Parental gene:

ENSSSCG00000014540

Aliases:None
Description:Sus scrofa ferritin, heavy polypeptide 1 (FTH1), mRNA. [Source:RefSeq mRNA;Acc:NM_213975]
Organism:Pig (Sus scrofa)
Coordinates:2:8983276..8986090(+)


>ENSSSCG00000014540
ATGACGACCTCGTGCTCCTCGCAGGTGCGCCAGAACTACCACCAGGACTCGGAGGCGGCCATCAACCGCCAGATCAACCT
GGAGCTCTATGCCTCCTACGTCTACCTGTCCATGTCATACTATTTTGACCGCGATGATGTGGCTTTGAAGAACTTTGCCA
AATACTTTCTTCATCAATCTCATGAGGAGAGGGAACATGCTGAGAAACTGATGAAGCTGCAGAACCAACGAGGTGGCCGA
ATCTTCCTTCAGGATATCAAGAAACCGGAGCGCGATGACTGGGAGAATGGGCTGACTGCCATGGAATGTGCGCTGCACTT
GGAAAAAAACGTGAATCAGTCCCTGCTGGAACTGCACAAACTGGCCACTGACAAAAATGACCCCCACTTGTGTGACTTCA
TTGAGACGCATTACCTGGATGAGCAGGTGAAAGCCATCAAAGAATTGGGTGACCACATTACCAACTTGCACAGGATGGGG
GCCCCCGAGTATGGCATGGCCGAGTATCTCTTTGACAAGCACACCCTGGGGAGCAGTGAGAGCTAA

Library Parental gene expression (RPM)
SRP014902_placenta 2803 .55 RPM
SRP014902_testis 1553 .08 RPM
SRP018856_adipose 6323 .18 RPM
SRP018288_kidney 4845 .69 RPM
SRP018288_lung 1533 .50 RPM
SRP018288_liver 3195 .47 RPM
SRP018288_heart 1380 .53 RPM
SRP035408_liver 1346 .58 RPM
SRP035408_brain 1830 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016831 possible_ortholog 1 retrogene
Bos taurus ENSBTAG00000011184 ortholog_one2many 10 retrogenes
Canis familiaris ENSCAFG00000015901 possible_ortholog 1 retrogene
Callithrix jacchus ENSCJAG00000019089 possible_ortholog 16 retrogenes
Cavia porcellus ENSCPOG00000026586 ortholog_one2many 3 retrogenes
Dasypus novemcinctus ENSDNOG00000017128 possible_ortholog 83 retrogenes
Felis catus ENSFCAG00000007382 possible_ortholog 1 retrogene
Homo sapiens ENSG00000167996 possible_ortholog 20 retrogenes
Gorilla gorilla ENSGGOG00000027722 possible_ortholog 7 retrogenes
Latimeria chalumnae ENSLACG00000017426 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000004824 possible_ortholog 12 retrogenes
Microcebus murinus ENSMICG00000005851 possible_ortholog 6 retrogenes
Myotis lucifugus ENSMLUG00000025726 possible_ortholog 16 retrogenes
Monodelphis domestica ENSMODG00000007582 possible_ortholog 9 retrogenes
Mustela putorius furo ENSMPUG00000014030 possible_ortholog 3 retrogenes
Mus musculus ENSMUSG00000024661 possible_ortholog 4 retrogenes
Nomascus leucogenys ENSNLEG00000003321 possible_ortholog 29 retrogenes
Oryctolagus cuniculus ENSOCUG00000014108 possible_ortholog 4 retrogenes
Otolemur garnettii ENSOGAG00000025354 possible_ortholog 9 retrogenes
Ochotona princeps ENSOPRG00000010734 ortholog_one2many 7 retrogenes
Procavia capensis ENSPCAG00000010377 possible_ortholog 13 retrogenes
Pongo abelii ENSPPYG00000003173 possible_ortholog 12 retrogenes
Pteropus vampyrus ENSPVAG00000013038 possible_ortholog 3 retrogenes
Rattus norvegicus ENSRNOG00000022619 possible_ortholog 9 retrogenes
Sus scrofa ENSSSCG00000003153 other_paralog 33 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000014521 possible_ortholog 1 retrogene
Vicugna pacos ENSVPAG00000003956 possible_ortholog 6 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_78 77.65 98.34
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2. retro_sscr_168 74.38 66.30
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3. retro_sscr_286 63.97 74.59
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4. retro_sscr_359 85.98 58.56
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5. retro_sscr_498 83.06 99.45
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6. retro_sscr_581 81.97 65.75
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7. retro_sscr_906 65.85 67.40
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8. retro_sscr_949 66.29 93.92
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9. retro_sscr_1045 56.91 66.30
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Download FASTA sequences of all ENSSSCG00000014540 retrocopies