Parental gene:

NDUFA4, ENSSSCG00000024313

Aliases:None
Description:Sus scrofa NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001097468]
Organism:Pig (Sus scrofa)
Coordinates:9:88555976..88562999(-)


>ENSSSCG00000024313
ATGCTTCGCCAGATCATCACGCAGGCCAAGAAGCATCCTAGCTTGATCCCCCTCTTTGTATTTATTGGTGCTGGAGGTAC
TGGAGCAGCACTGTATGTCACACGCCTGGCATTGTTCAATCCAGATGTCTGTTGGGACAGGAAGAATAACCCAGAACCCT
GGAATAAACTGGGTCCCAATGATCAATACAAGTTCTTTGCGGTGAATGTAGATTACAGCAAACTGAAGAAAGAAGGTCCA
GACTTCTAA

Library Parental gene expression (RPM)
SRP014902_placenta 58 .14 RPM
SRP014902_testis 36 .92 RPM
SRP018856_adipose 76 .74 RPM
SRP018288_kidney 371 .66 RPM
SRP018288_lung 54 .17 RPM
SRP018288_liver 173 .98 RPM
SRP018288_heart 841 .08 RPM
SRP035408_liver 105 .92 RPM
SRP035408_brain 162 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002493 ortholog_one2many 10 retrogenes
retro_amel_1356, retro_amel_1633, retro_amel_18, retro_amel_1800, retro_amel_1866, retro_amel_533, retro_amel_608, retro_amel_638, retro_amel_845, retro_amel_955,
Bos taurus ENSBTAG00000011145 ortholog_one2one 7 retrogenes
retro_btau_1075, retro_btau_1155, retro_btau_1375, retro_btau_1454, retro_btau_1710, retro_btau_645, retro_btau_800,
Callithrix jacchus ENSCJAG00000000748 possible_ortholog 3 retrogenes
retro_cjac_3291, retro_cjac_36, retro_cjac_90,
Equus caballus ENSECAG00000026987 ortholog_one2one 1 retrogene
retro_ecab_370,
Felis catus ENSFCAG00000024790 ortholog_one2one 4 retrogenes
retro_fcat_261, retro_fcat_449, retro_fcat_459, retro_fcat_905,
Gorilla gorilla ENSGGOG00000001437 possible_ortholog 3 retrogenes
retro_ggor_249, retro_ggor_30, retro_ggor_567,
Myotis lucifugus ENSMLUG00000006470 ortholog_one2one 6 retrogenes
retro_mluc_1778, retro_mluc_1821, retro_mluc_329, retro_mluc_450, retro_mluc_517, retro_mluc_849,
Macaca mulatta ENSMMUG00000020894 possible_ortholog 2 retrogenes
retro_mmul_272, retro_mmul_274,
Monodelphis domestica ENSMODG00000014107 ortholog_one2one 2 retrogenes
retro_mdom_1095, retro_mdom_1593,
Mustela putorius furo ENSMPUG00000014152 ortholog_one2one 8 retrogenes
retro_mputfur_1127, retro_mputfur_1600, retro_mputfur_416, retro_mputfur_696, retro_mputfur_711, retro_mputfur_790, retro_mputfur_827, retro_mputfur_880,
Mus musculus ENSMUSG00000029632 ortholog_one2one 4 retrogenes
retro_mmus_2172, retro_mmus_3219, retro_mmus_3412, retro_mmus_3620,
Oryctolagus cuniculus ENSOCUG00000029372 possible_ortholog 1 retrogene
retro_ocun_41,
Otolemur garnettii ENSOGAG00000000358 possible_ortholog 17 retrogenes
retro_ogar_1023, retro_ogar_1026, retro_ogar_1319, retro_ogar_1403, retro_ogar_1566, retro_ogar_1960, retro_ogar_1976, retro_ogar_2050, retro_ogar_2350, retro_ogar_2528, retro_ogar_3023, retro_ogar_3413, retro_ogar_3434, retro_ogar_3457, retro_ogar_694, retro_ogar_731, retro_ogar_997,
Ochotona princeps ENSOPRG00000014186 ortholog_one2one 3 retrogenes
retro_opri_1138, retro_opri_275, retro_opri_633,
Pongo abelii ENSPPYG00000017780 possible_ortholog 5 retrogenes
retro_pabe_2296, retro_pabe_24, retro_pabe_301, retro_pabe_3339, retro_pabe_678,
Pteropus vampyrus ENSPVAG00000006660 ortholog_one2one 5 retrogenes
retro_pvam_1092, retro_pvam_1436, retro_pvam_1441, retro_pvam_545, retro_pvam_798,
Rattus norvegicus ENSRNOG00000005512 ortholog_one2one 3 retrogenes
retro_rnor_1880, retro_rnor_2327, retro_rnor_2985,
Sorex araneus ENSSARG00000011125 ortholog_one2one 8 retrogenes
retro_sara_160, retro_sara_203, retro_sara_316, retro_sara_339, retro_sara_49, retro_sara_536, retro_sara_659, retro_sara_747,
Tupaia belangeri ENSTBEG00000016629 ortholog_one2one 16 retrogenes
retro_tbel_1049, retro_tbel_1848, retro_tbel_2008, retro_tbel_2058, retro_tbel_2194, retro_tbel_2274, retro_tbel_2423, retro_tbel_2761, retro_tbel_3262, retro_tbel_4255, retro_tbel_4309, retro_tbel_436, retro_tbel_4380, retro_tbel_4426, retro_tbel_4719, retro_tbel_815,
Tursiops truncatus ENSTTRG00000013045 ortholog_one2one 8 retrogenes
retro_ttru_1057, retro_ttru_132, retro_ttru_1709, retro_ttru_1745, retro_ttru_1841, retro_ttru_218, retro_ttru_257, retro_ttru_308,
Vicugna pacos ENSVPAG00000010003 ortholog_one2one 1 retrogene
retro_vpac_262,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_367 86.59 100.00
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2. retro_sscr_552 68.33 71.95
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3. retro_sscr_642 79.27 100.00
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4. retro_sscr_682 77.78 76.83
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5. retro_sscr_733 72.13 74.39
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6. retro_sscr_1155 83.33 65.85
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Download FASTA sequences of all ENSSSCG00000024313 retrocopies