Parental gene:

NDUFA4, ENSPPYG00000017780

Aliases:None
Description:NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa [Source:HGNC Symbol;Acc:7687]
Organism:Orangutan (Pongo abelii)
Coordinates:7:74025897..74034106(+)


>ENSPPYG00000017780
ATGCTCCGCCAGATCCTCAGTCAGGCCAAGAAGCATCCGAGCTTGATCCCCCTCTTTGTATTTATTGGAACTGGAGCTTC
TGGAGCAACACTGTATCTCTTGCGTCTGGCATTGTTCAATCCAGATGTTTGTTGGGACAGAAATAACCCAGAGCCCTGGA
ACAAACTGGGTCCCAATGATCAATACAAGTTCTACTCAGTGAATGTGGATTACAGCAAGCTGAAGAAGGAACGTCCAGAT
TTCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 157 .08 RPM
SRP007412_cerebellum 123 .06 RPM
SRP007412_heart 305 .28 RPM
SRP007412_kidney 125 .86 RPM
SRP007412_liver 57 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002493 possible_ortholog 10 retrogenes
Bos taurus ENSBTAG00000011145 possible_ortholog 7 retrogenes
Choloepus hoffmanni ENSCHOG00000012330 ortholog_one2many 1 retrogene
Callithrix jacchus ENSCJAG00000000748 ortholog_many2many 3 retrogenes
Dasypus novemcinctus ENSDNOG00000011217 ortholog_one2many 12 retrogenes
Equus caballus ENSECAG00000026987 possible_ortholog 1 retrogene
Felis catus ENSFCAG00000024790 possible_ortholog 4 retrogenes
Homo sapiens ENSG00000189043 ortholog_one2one 18 retrogenes
Gorilla gorilla ENSGGOG00000001437 ortholog_one2one 3 retrogenes
Microcebus murinus ENSMICG00000013999 ortholog_one2many 5 retrogenes
Myotis lucifugus ENSMLUG00000006470 possible_ortholog 6 retrogenes
Macaca mulatta ENSMMUG00000020894 ortholog_many2many 2 retrogenes
Monodelphis domestica ENSMODG00000014107 ortholog_one2many 2 retrogenes
Mustela putorius furo ENSMPUG00000014152 possible_ortholog 8 retrogenes
Mus musculus ENSMUSG00000029632 possible_ortholog 4 retrogenes
Oryctolagus cuniculus ENSOCUG00000029372 ortholog_one2many 1 retrogene
Otolemur garnettii ENSOGAG00000000358 ortholog_many2many 17 retrogenes
Ochotona princeps ENSOPRG00000014186 possible_ortholog 3 retrogenes
Pan troglodytes ENSPTRG00000018934 ortholog_one2one 19 retrogenes
Pteropus vampyrus ENSPVAG00000006660 possible_ortholog 5 retrogenes
Rattus norvegicus ENSRNOG00000005512 possible_ortholog 3 retrogenes
Sorex araneus ENSSARG00000011125 possible_ortholog 8 retrogenes
Sus scrofa ENSSSCG00000024313 possible_ortholog 6 retrogenes
Tupaia belangeri ENSTBEG00000016629 ortholog_one2many 16 retrogenes
Tarsius syrichta ENSTSYG00000000041 ortholog_one2many 15 retrogenes
Tursiops truncatus ENSTTRG00000013045 possible_ortholog 8 retrogenes
Vicugna pacos ENSVPAG00000010003 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_24 96.30 100.00
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2. retro_pabe_301 81.71 100.00
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3. retro_pabe_678 70.73 100.00
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4. retro_pabe_2296 80.49 100.00
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5. retro_pabe_3339 78.75 98.77
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Download FASTA sequences of all ENSPPYG00000017780 retrocopies