RetrogeneDB - Parental gene ENSCJAG00000000748 details

							
>ENSCJAG00000000748
ATGCTCCGCCACATCTTAGGTCAGGCCAAGAAGCATCCGAGCTTGATCCCCCTGTTTGTATTTATTGGAGCTGGAGGTGG

TGGAGCAGCCCTGTATCTCTTGCGTTTGGCATTGTTCAATCCAGATGTTTGTTGGGACAAAAAGAATAACCCAGAGCCCT

GGAACAAACTGGGTCCCAATGATCAATACAAGTTCTACTCAGTGAATGTGGATTACAGCAAACTGAAGAAAGAACGTCCA

GATTTCTAA

Library	Parental gene expression (RPM)
SRP051959_spleen	16 .47 RPM
SRP051959_skeletal_muscle	112 .79 RPM
SRP051959_lymph_node	13 .54 RPM
SRP051959_lung	10 .28 RPM
SRP051959_liver	37 .71 RPM
SRP051959_kidney	36 .14 RPM
SRP051959_heart	99 .24 RPM
SRP051959_colon	26 .27 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000002493	possible_ortholog	10 retrogenes	retro_amel_1356, retro_amel_1633, retro_amel_18, retro_amel_1800, retro_amel_1866, retro_amel_533, retro_amel_608, retro_amel_638, retro_amel_845, retro_amel_955,
Bos taurus	ENSBTAG00000011145	possible_ortholog	7 retrogenes	retro_btau_1075, retro_btau_1155, retro_btau_1375, retro_btau_1454, retro_btau_1710, retro_btau_645, retro_btau_800,
Choloepus hoffmanni	ENSCHOG00000012330	ortholog_one2many	1 retrogene	retro_chof_2667,
Dasypus novemcinctus	ENSDNOG00000011217	ortholog_one2many	12 retrogenes	retro_dnov_1874, retro_dnov_1921, retro_dnov_2015, retro_dnov_2258, retro_dnov_2566, retro_dnov_2567, retro_dnov_2641, retro_dnov_349, retro_dnov_506, retro_dnov_725, retro_dnov_744, retro_dnov_764,
Equus caballus	ENSECAG00000026987	possible_ortholog	1 retrogene	retro_ecab_370,
Felis catus	ENSFCAG00000024790	possible_ortholog	4 retrogenes	retro_fcat_261, retro_fcat_449, retro_fcat_459, retro_fcat_905,
Homo sapiens	ENSG00000189043	ortholog_one2many	18 retrogenes	retro_hsap_1459, retro_hsap_200, retro_hsap_2374, retro_hsap_2386, retro_hsap_259, retro_hsap_2685, retro_hsap_2726, retro_hsap_285, retro_hsap_3241, retro_hsap_4067, retro_hsap_4188, retro_hsap_4292, retro_hsap_4699, retro_hsap_4700, retro_hsap_4750, retro_hsap_4856, retro_hsap_650, retro_hsap_877,
Gorilla gorilla	ENSGGOG00000001437	ortholog_many2many	3 retrogenes	retro_ggor_249, retro_ggor_30, retro_ggor_567,
Microcebus murinus	ENSMICG00000013999	ortholog_one2many	5 retrogenes	retro_mmur_1225, retro_mmur_1314, retro_mmur_133, retro_mmur_341, retro_mmur_696,
Myotis lucifugus	ENSMLUG00000006470	possible_ortholog	6 retrogenes	retro_mluc_1778, retro_mluc_1821, retro_mluc_329, retro_mluc_450, retro_mluc_517, retro_mluc_849,
Macaca mulatta	ENSMMUG00000020894	ortholog_many2many	2 retrogenes	retro_mmul_272, retro_mmul_274,
Monodelphis domestica	ENSMODG00000014107	ortholog_one2many	2 retrogenes	retro_mdom_1095, retro_mdom_1593,
Mustela putorius furo	ENSMPUG00000014152	possible_ortholog	8 retrogenes	retro_mputfur_1127, retro_mputfur_1600, retro_mputfur_416, retro_mputfur_696, retro_mputfur_711, retro_mputfur_790, retro_mputfur_827, retro_mputfur_880,
Mus musculus	ENSMUSG00000029632	possible_ortholog	4 retrogenes	retro_mmus_2172, retro_mmus_3219, retro_mmus_3412, retro_mmus_3620,
Oryctolagus cuniculus	ENSOCUG00000029372	ortholog_one2many	1 retrogene	retro_ocun_41,
Otolemur garnettii	ENSOGAG00000000358	ortholog_many2many	17 retrogenes	retro_ogar_1023, retro_ogar_1026, retro_ogar_1319, retro_ogar_1403, retro_ogar_1566, retro_ogar_1960, retro_ogar_1976, retro_ogar_2050, retro_ogar_2350, retro_ogar_2528, retro_ogar_3023, retro_ogar_3413, retro_ogar_3434, retro_ogar_3457, retro_ogar_694, retro_ogar_731, retro_ogar_997,
Ochotona princeps	ENSOPRG00000014186	possible_ortholog	3 retrogenes	retro_opri_1138, retro_opri_275, retro_opri_633,
Pongo abelii	ENSPPYG00000017780	ortholog_many2many	5 retrogenes	retro_pabe_2296, retro_pabe_24, retro_pabe_301, retro_pabe_3339, retro_pabe_678,
Pan troglodytes	ENSPTRG00000018934	ortholog_one2many	19 retrogenes	retro_ptro_1134, retro_ptro_1736, retro_ptro_1745, retro_ptro_1811, retro_ptro_182, retro_ptro_1842, retro_ptro_219, retro_ptro_2191, retro_ptro_235, retro_ptro_2756, retro_ptro_2844, retro_ptro_2908, retro_ptro_3034, retro_ptro_3123, retro_ptro_3165, retro_ptro_3233, retro_ptro_473, retro_ptro_766, retro_ptro_993,
Pteropus vampyrus	ENSPVAG00000006660	possible_ortholog	5 retrogenes	retro_pvam_1092, retro_pvam_1436, retro_pvam_1441, retro_pvam_545, retro_pvam_798,
Rattus norvegicus	ENSRNOG00000005512	possible_ortholog	3 retrogenes	retro_rnor_1880, retro_rnor_2327, retro_rnor_2985,
Sorex araneus	ENSSARG00000011125	possible_ortholog	8 retrogenes	retro_sara_160, retro_sara_203, retro_sara_316, retro_sara_339, retro_sara_49, retro_sara_536, retro_sara_659, retro_sara_747,
Sus scrofa	ENSSSCG00000024313	possible_ortholog	6 retrogenes	retro_sscr_1155, retro_sscr_367, retro_sscr_552, retro_sscr_642, retro_sscr_682, retro_sscr_733,
Tupaia belangeri	ENSTBEG00000016629	ortholog_one2many	16 retrogenes	retro_tbel_1049, retro_tbel_1848, retro_tbel_2008, retro_tbel_2058, retro_tbel_2194, retro_tbel_2274, retro_tbel_2423, retro_tbel_2761, retro_tbel_3262, retro_tbel_4255, retro_tbel_4309, retro_tbel_436, retro_tbel_4380, retro_tbel_4426, retro_tbel_4719, retro_tbel_815,
Tarsius syrichta	ENSTSYG00000000041	ortholog_one2many	15 retrogenes	retro_tsyr_1427, retro_tsyr_1650, retro_tsyr_1766, retro_tsyr_1948, retro_tsyr_1973, retro_tsyr_1974, retro_tsyr_198, retro_tsyr_270, retro_tsyr_425, retro_tsyr_473, retro_tsyr_492, retro_tsyr_659, retro_tsyr_685, retro_tsyr_821, retro_tsyr_937,
Tursiops truncatus	ENSTTRG00000013045	possible_ortholog	8 retrogenes	retro_ttru_1057, retro_ttru_132, retro_ttru_1709, retro_ttru_1745, retro_ttru_1841, retro_ttru_218, retro_ttru_257, retro_ttru_308,
Vicugna pacos	ENSVPAG00000010003	possible_ortholog	1 retrogene	retro_vpac_262,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cjac_36	81.71	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cjac_90	98.78	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cjac_3291	63.51	89.02	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCJAG00000000748 retrocopies

Parental gene:	NDUFA4, ENSCJAG00000000748
Aliases:	None
Description:	NADH dehydrogenase [Source:RefSeq peptide;Acc:NP_001240705]
Organism:	*Marmoset (Callithrix jacchus)*
Coordinates:	8:45446667..45454402(+)

Parental gene:

NDUFA4, ENSCJAG00000000748