RetrogeneDB ID: | retro_amel_192 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192349.1:4121812..4122217(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3B | ||
Ensembl ID: | ENSAMEG00000009765 | ||
Aliases: | None | ||
Description: | H3 histone, family 3B (H3.3B) [Source:HGNC Symbol;Acc:4765] |
Percent Identity: | 83.21 % |
Parental protein coverage: | 99.26 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPG-TVALREIRRYQKSTELLIRKLPFQR |
A.T.QTA.K.TG.KAPRKQLATKAARKSAPSTGGVKKPHRYRPG.TVALRE.R..QKSTEL.IRKLPFQR | |
Retrocopy | AHTEQTAGKPTGRKAPRKQLATKAARKSAPSTGGVKKPHRYRPG>TVALREVRC*QKSTELPIRKLPFQR |
Parental | LVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA |
LVREIAQDFKTDLRFQ.AAIGA.Q..SEAYLVGLFED.NLCAIHAK.VT.....DIQLARRI..ERA | |
Retrocopy | LVREIAQDFKTDLRFQRAAIGAWQGTSEAYLVGLFEDSNLCAIHAKHVTVS<LRDIQLARRICVERA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009765 | 3 retrocopies |
retro_amel_1636, retro_amel_1794, retro_amel_192 ,
|
Ailuropoda melanoleuca | ENSAMEG00000014588 | 7 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000009661 | 10 retrocopies | |
Cavia porcellus | ENSCPOG00000004707 | 7 retrocopies | |
Loxodonta africana | ENSLAFG00000021624 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000015447 | 10 retrocopies | |
Mus musculus | ENSMUSG00000060743 | 19 retrocopies |
retro_mmus_1053, retro_mmus_1116, retro_mmus_1139, retro_mmus_1151, retro_mmus_1254, retro_mmus_2285, retro_mmus_2614, retro_mmus_2934, retro_mmus_3009, retro_mmus_3213, retro_mmus_3425, retro_mmus_395, retro_mmus_498, retro_mmus_808, retro_mmus_884, retro_mmus_885, retro_mmus_886, retro_mmus_959, retro_mmus_960,
|
Oryctolagus cuniculus | ENSOCUG00000024644 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008636 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000024226 | 8 retrocopies | |
Tupaia belangeri | ENSTBEG00000006177 | 13 retrocopies |