RetrogeneDB ID: | retro_mmus_884 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 12:87629990..87630399(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3f3a | ||
Ensembl ID: | ENSMUSG00000060743 | ||
Aliases: | H3f3a, H3.3A | ||
Description: | H3 histone, family 3A [Source:MGI Symbol;Acc:MGI:1097686] |
Percent Identity: | 86.13 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKK-PHRYRPGTVALREIRRYQKSTELLIRKLPFQ |
MA.TKQTARKSTG.KAPRKQLATKAA.KSAPST.GVKK.PH.YRPGTVAL.EIR.Y.KSTELLIRKLPF. | |
Retrocopy | MAHTKQTARKSTGVKAPRKQLATKAASKSAPSTRGVKK>PHHYRPGTVALGEIRHYRKSTELLIRKLPFH |
Parental | RLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
.LV.EIA.DFKTDL.FQ.AAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA..I.GE.A | |
Retrocopy | CLV*EIARDFKTDLCFQNAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAH*IHGEHA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 12 .50 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .64 RPM |
SRP007412_heart | 0 .00 RPM | 12 .70 RPM |
SRP007412_kidney | 0 .02 RPM | 15 .34 RPM |
SRP007412_liver | 0 .00 RPM | 8 .74 RPM |
SRP007412_testis | 0 .00 RPM | 30 .87 RPM |