RetrogeneDB ID: | retro_amel_903 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192725.1:949089..949447(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3A | ||
Ensembl ID: | ENSAMEG00000014588 | ||
Aliases: | None | ||
Description: | H3 histone, family 3A [Source:HGNC Symbol;Acc:4764] |
Percent Identity: | 71.77 % |
Parental protein coverage: | 88.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | PRKQLATKAARKSAPSTGGV-KKPHRYRPGTV-ALREIRRYQKSTELLIRKLPFQRLVR-EIAQDFKTDL |
PRK.LAT.A..K.APS.G...KKPH...P.....L.EIRR.QKS.E..IRKLP.Q.LV..EIAQDFK.DL | |
Retrocopy | PRKELATEATGKIAPSAGRG<KKPHPHSPSPG>SLSEIRRDQKSAERQIRKLPLQHLVE<EIAQDFKRDL |
Parental | RFQSAAIGALQEASEAYLVGLFEDTNLCAIHA-KRVTIMPKDIQLARRIRGERA |
.FQSAA.GALQEASEAYL.GLFEDT.LCA.HA..RVTI.PKDIQLARRIRGERA | |
Retrocopy | CFQSAATGALQEASEAYLGGLFEDTSLCAVHA<QRVTIRPKDIQLARRIRGERA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |