RetrogeneDB ID: | retro_mmus_1053 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:98973353..98973745(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3f3a | ||
Ensembl ID: | ENSMUSG00000060743 | ||
Aliases: | H3f3a, H3.3A | ||
Description: | H3 histone, family 3A [Source:MGI Symbol;Acc:MGI:1097686] |
Percent Identity: | 80.74 % |
Parental protein coverage: | 98.53 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR |
MA.TKQTARKST.GKAP...L.........PSTGGVKKPHRYRPGTVALREIR.YQK.TELLIRKL.FQ. | |
Retrocopy | MA*TKQTARKSTSGKAP---LLSLSPNSGVPSTGGVKKPHRYRPGTVALREIRGYQK*TELLIRKLLFQS |
Parental | LVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI-MPKDIQLARRIRGE |
LVRE.AQ.FKTDLRFQSAAIGALQEASE.YLVGLFEDTNLC.IHAKRVTI.MPKDIQLAR.I..E | |
Retrocopy | LVREMAQNFKTDLRFQSAAIGALQEASESYLVGLFEDTNLCVIHAKRVTI<MPKDIQLARQIGEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 12 .50 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .64 RPM |
SRP007412_heart | 0 .00 RPM | 12 .70 RPM |
SRP007412_kidney | 0 .00 RPM | 15 .34 RPM |
SRP007412_liver | 0 .00 RPM | 8 .74 RPM |
SRP007412_testis | 0 .00 RPM | 30 .87 RPM |