Parental gene:

H3f3a, ENSMUSG00000060743

Aliases:H3f3a, H3.3A
Description:H3 histone, family 3A [Source:MGI Symbol;Acc:MGI:1097686]
Organism:Mouse (Mus musculus)
Coordinates:1:180800831..180813943(-)


>ENSMUSG00000060743
ATGGCTCGTACAAAGCAGACTGCCCGCAAATCCACCGGTGGTAAAGCACCCAGGAAACAACTGGCTACAAAAGCCGCTCG
CAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGGCCTGGTACTGTGGCCCTCCGTGAAATCAGAC
GCTATCAGAAGTCCACTGAACTTCTGATCCGCAAGCTCCCCTTTCAGCGTCTGGTGCGAGAAATTGCTCAGGACTTCAAA
ACAGATCTGCGCTTCCAGAGTGCAGCTATTGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGA
TACCAATCTGTGTGCTATCCATGCCAAACGTGTAACAATTATGCCAAAAGATATCCAGCTAGCACGCCGCATACGCGGAG
AACGTGCTTAA

Library Parental gene expression (RPM)
SRP007412_brain 12 .50 RPM
SRP007412_cerebellum 12 .64 RPM
SRP007412_heart 12 .70 RPM
SRP007412_kidney 15 .34 RPM
SRP007412_liver 8 .74 RPM
SRP007412_testis 30 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009765 ortholog_one2one 3 retrogenes
retro_amel_1636, retro_amel_1794, retro_amel_192,
Choloepus hoffmanni ENSCHOG00000009661 ortholog_one2one 10 retrogenes
retro_chof_1580, retro_chof_1635, retro_chof_1911, retro_chof_2281, retro_chof_2294, retro_chof_2343, retro_chof_2546, retro_chof_454, retro_chof_517, retro_chof_530,
Cavia porcellus ENSCPOG00000004707 ortholog_one2one 7 retrogenes
retro_cpor_1059, retro_cpor_1390, retro_cpor_1524, retro_cpor_432, retro_cpor_695, retro_cpor_842, retro_cpor_853,
Loxodonta africana ENSLAFG00000021624 ortholog_one2one 4 retrogenes
retro_lafr_172, retro_lafr_410, retro_lafr_546, retro_lafr_832,
Myotis lucifugus ENSMLUG00000015447 ortholog_one2one 10 retrogenes
retro_mluc_146, retro_mluc_1571, retro_mluc_2286, retro_mluc_2344, retro_mluc_2364, retro_mluc_246, retro_mluc_2468, retro_mluc_2500, retro_mluc_392, retro_mluc_613,
Mus musculus ENSMUSG00000016559 within_species_paralog 18 retrogenes
retro_mmus_1058, retro_mmus_1188, retro_mmus_1269, retro_mmus_1535, retro_mmus_1635, retro_mmus_2021, retro_mmus_2083, retro_mmus_2377, retro_mmus_2771, retro_mmus_2867, retro_mmus_2972, retro_mmus_3002, retro_mmus_3144, retro_mmus_3477, retro_mmus_3667, retro_mmus_896, retro_mmus_961, retro_mmus_962,
Oryctolagus cuniculus ENSOCUG00000024644 possible_ortholog 2 retrogenes
retro_ocun_185, retro_ocun_217,
Pongo abelii ENSPPYG00000008636 possible_ortholog 1 retrogene
retro_pabe_2662,
Ictidomys tridecemlineatus ENSSTOG00000024226 ortholog_one2one 8 retrogenes
retro_itri_315, retro_itri_449, retro_itri_465, retro_itri_505, retro_itri_649, retro_itri_695, retro_itri_764, retro_itri_771,
Tupaia belangeri ENSTBEG00000006177 ortholog_one2one 13 retrogenes
retro_tbel_110, retro_tbel_1274, retro_tbel_15, retro_tbel_170, retro_tbel_2335, retro_tbel_3341, retro_tbel_3342, retro_tbel_3820, retro_tbel_391, retro_tbel_487, retro_tbel_592, retro_tbel_783, retro_tbel_978,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_395 96.49 83.09
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2. retro_mmus_498 69.40 98.53
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3. retro_mmus_808 88.41 100.00
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4. retro_mmus_884 86.13 100.00
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5. retro_mmus_885 86.13 100.00
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6. retro_mmus_886 87.59 100.00
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7. retro_mmus_959 88.24 100.00
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8. retro_mmus_960 86.03 100.00
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9. retro_mmus_1053 80.74 98.53
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10. retro_mmus_1116 91.18 100.00
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11. retro_mmus_1139 97.79 100.00
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12. retro_mmus_1151 98.53 100.00
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13. retro_mmus_1254 91.91 100.00
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14. retro_mmus_2285 96.64 86.76
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15. retro_mmus_2614 82.35 100.00
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16. retro_mmus_2934 70.37 97.79
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17. retro_mmus_3009 67.39 100.00
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18. retro_mmus_3213 89.05 100.00
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19. retro_mmus_3425 80.29 100.00
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Download FASTA sequences of all ENSMUSG00000060743 retrocopies