RetrogeneDB ID: | retro_amel_1023 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192837.1:512447..512818(+) | ||
Located in intron of: | ENSAMEG00000017472 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3A | ||
Ensembl ID: | ENSAMEG00000014588 | ||
Aliases: | None | ||
Description: | H3 histone, family 3A [Source:HGNC Symbol;Acc:4764] |
Percent Identity: | 70.99 % |
Parental protein coverage: | 93.38 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF |
KSTGG....K.L.....RK...STG..KK..RYRPG.VAL.EIRRYQKS.ELLI.KLPFQ.LV.EIAQDF | |
Retrocopy | KSTGG----KALRKQLDRKA--STGRMKKSNRYRPGIVALCEIRRYQKSAELLIHKLPFQQLV*EIAQDF |
Parental | KTDLRFQS-AAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ---LARRIRGERA |
KTDL.FQS..AIGALQEASEAYLVGLFE.TN..AIHAK.VTIMP.DIQ....A.R.RGE.A | |
Retrocopy | KTDLCFQS<SAIGALQEASEAYLVGLFENTNMYAIHAKCVTIMPEDIQKTSCASRTRGECA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |