RetrogeneDB ID: | retro_amel_711 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192583.1:922766..923137(-) | ||
Located in intron of: | ENSAMEG00000001126 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3A | ||
Ensembl ID: | ENSAMEG00000014588 | ||
Aliases: | None | ||
Description: | H3 histone, family 3A [Source:HGNC Symbol;Acc:4764] |
Percent Identity: | 73.81 % |
Parental protein coverage: | 91.18 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MARTKQTARKSTGGKAPRKQLATK-AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQ |
MA.TK.T.RKST.GKA.RK.L.TK.A..KSAPS.GGVKKPHRY.PGT.AL.E.RRYQK.TELLIRKLPFQ | |
Retrocopy | MAYTKHTTRKSTSGKALRK*LTTK>ATSKSAPSSGGVKKPHRYGPGTAALCETRRYQKYTELLIRKLPFQ |
Parental | RLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDT-NLCAIHAKRVTIMPKD |
.LV..IAQDF..DLRF..AA.GALQEAS.A.LVGL..DT.NLCAIH.K.V.IMP.D | |
Retrocopy | HLVQKIAQDFERDLRF-GAATGALQEASKASLVGLLKDT>NLCAIHTKHVKIMPED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |