RetrogeneDB ID: | retro_amel_449 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192448.1:2234081..2234828(-) | ||
Located in intron of: | ENSAMEG00000003223 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF9B | ||
Ensembl ID: | ENSAMEG00000017613 | ||
Aliases: | None | ||
Description: | TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa [Source:HGNC Symbol;Acc:17306] |
Percent Identity: | 80.56 % |
Parental protein coverage: | 97.27 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADD |
MESGKMA.PK..P.DA..MAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKK..VDADD | |
Retrocopy | MESGKMASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADD |
Parental | VRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLIKKKGEMG |
VRLAIQCRADQSFTSPPPRDFLLDIARQ.NQTPLPLIKPY.GPRLPPDRYCLTAPNYRLKSL.KK..... | |
Retrocopy | VRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKK---AS |
Parental | PNQGRL-VPRLSVGAVSSRPSTPTVATATPQTASAPSKVAPPVSVTSQRFTVQIPPSQSTPVK-SVPATT |
...GR..VPRLSVG.V.SRPSTPT..T.TPQT.S...KV..P.S.T.QRFTVQ.P.SQS..VK.S.PAT. | |
Retrocopy | TSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSPTVKASIPATS |
Parental | AVQNVLINPSIIGPKNILITTNMVSSQNMANE-SNSLKRKHE |
.VQNVLINPS.IG.KNILITTNMVSSQN.ANE.SN.LKRK.E | |
Retrocopy | TVQNVLINPSLIGSKNILITTNMVSSQNTANESSNALKRKRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |