Parental gene:

TAF9B, ENSCJAG00000019520

Aliases:None
Description:TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa [Source:HGNC Symbol;Acc:17306]
Organism:Marmoset (Callithrix jacchus)
Coordinates:X:69333463..69343679(-)


>ENSCJAG00000019520
ATGGAGTCGGGCAAGATGGCGCCTCCCAAGAACGCTCCGAGAGATGCCTTGGTGATGGCACAGATCCTGAAGGATATGGG
AATCACAGAGTACGAACCAAGGGTTATAAATCAAATGTTGGAATTTGCTTTCCGATATGTGACTACAATTCTGGATGATG
CAAAAATTTATTCAAGCCATGCTAAGAAACCCAATGTTGATGCAGATGATGTGAGACTGGCAATCCAGTGTCGTGCTGAT
CAGTCTTTTACCTCTCCTCCCCCCAAGAGGTTTTTACTGGACATCGCAAGGCAGAAAAATCAAACACCTTTGCCACTGAT
TAAGCCATATGCAGGACCTAGACTGCCACCTGATAGATACTGCTTAACAGCTCCAAACTACAGGCTGAAGTCCTTAATTA
AAAAGAAGGGACCTAACCAAGGGAGACTAGTTCCACGATTAAGTGTTGGTGCTGTTAGTAGCAAACCTACCACTTCTACT
ATAGGTAAGTCGACCCCACAAACAGTGTCTGTCCCAAATAAAGTTGCAACTCCAATGTCAGTGACAAGCCAAAGATTTAC
GGTGCAGATTCCACCTTCTCAGTCCACACCTGTCAAACCAGCAGTTCCTGCAACAACTGCAGTTCAGAATGTTCTGATTA
ATCCTTCAATGATTGGGCCCAAAAATATTCTTATTACCACCAACATGGTTTCATCACAGAACACGGCCAATGAAGCAAAC
CCACTGAAGAGAAAACATGAAGATGATGATGACAATGATACTATTACAGATGCATTTCAAAAGGAA

Library Parental gene expression (RPM)
SRP051959_spleen 14 .92 RPM
SRP051959_skeletal_muscle 14 .28 RPM
SRP051959_lymph_node 11 .80 RPM
SRP051959_lung 14 .95 RPM
SRP051959_liver 10 .40 RPM
SRP051959_kidney 12 .54 RPM
SRP051959_heart 12 .94 RPM
SRP051959_colon 9 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017613 ortholog_one2one 1 retrogene
retro_amel_449,
Bos taurus ENSBTAG00000000895 ortholog_one2one 1 retrogene
retro_btau_196,
Canis familiaris ENSCAFG00000017278 ortholog_one2one 1 retrogene
retro_cfam_192,
Cavia porcellus ENSCPOG00000002098 ortholog_one2one 2 retrogenes
retro_cpor_906, retro_cpor_967,
Equus caballus ENSECAG00000010189 ortholog_one2one 1 retrogene
retro_ecab_303,
Erinaceus europaeus ENSEEUG00000010916 ortholog_one2one 1 retrogene
retro_eeur_18,
Felis catus ENSFCAG00000025493 ortholog_one2one 2 retrogenes
retro_fcat_1036, retro_fcat_260,
Homo sapiens ENSG00000187325 ortholog_one2one 1 retrogene
retro_hsap_2619,
Gorilla gorilla ENSGGOG00000002470 ortholog_one2one 2 retrogenes
retro_ggor_1833, retro_ggor_45,
Macropus eugenii ENSMEUG00000009697 ortholog_one2one 1 retrogene
retro_meug_140,
Myotis lucifugus ENSMLUG00000014581 ortholog_one2one 1 retrogene
retro_mluc_519,
Macaca mulatta ENSMMUG00000012875 ortholog_one2one 1 retrogene
retro_mmul_1480,
Monodelphis domestica ENSMODG00000004077 ortholog_one2one 1 retrogene
retro_mdom_850,
Mustela putorius furo ENSMPUG00000000084 ortholog_one2one 1 retrogene
retro_mputfur_63,
Mus musculus ENSMUSG00000047242 ortholog_one2one 1 retrogene
retro_mmus_161,
Nomascus leucogenys ENSNLEG00000001378 ortholog_one2one 5 retrogenes
retro_nleu_1677, retro_nleu_2566, retro_nleu_637, retro_nleu_920, retro_nleu_932,
Oryctolagus cuniculus ENSOCUG00000014717 ortholog_one2many 1 retrogene
retro_ocun_490,
Otolemur garnettii ENSOGAG00000011107 ortholog_one2one 3 retrogenes
retro_ogar_1128, retro_ogar_3100, retro_ogar_679,
Pongo abelii ENSPPYG00000020497 ortholog_one2one 4 retrogenes
retro_pabe_1634, retro_pabe_2341, retro_pabe_2748, retro_pabe_941,
Pan troglodytes ENSPTRG00000022053 ortholog_one2one 4 retrogenes
retro_ptro_1329, retro_ptro_1765, retro_ptro_2145, retro_ptro_772,
Pteropus vampyrus ENSPVAG00000017408 ortholog_one2one 1 retrogene
retro_pvam_6,
Rattus norvegicus ENSRNOG00000002453 ortholog_one2one 1 retrogene
retro_rnor_1492,
Sus scrofa ENSSSCG00000026714 ortholog_one2one 2 retrogenes
retro_sscr_1080, retro_sscr_525,
Ictidomys tridecemlineatus ENSSTOG00000001982 ortholog_one2one 3 retrogenes
retro_itri_1640, retro_itri_411, retro_itri_763,
Tarsius syrichta ENSTSYG00000007968 ortholog_one2one 1 retrogene
retro_tsyr_3,
Tursiops truncatus ENSTTRG00000015964 ortholog_one2one 1 retrogene
retro_ttru_572,
Vicugna pacos ENSVPAG00000001210 ortholog_one2one 1 retrogene
retro_vpac_16,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_246 79.92 98.09
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Download FASTA sequences of all ENSCJAG00000019520 retrocopies