RetrogeneDB ID: | retro_mdom_850 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 2:193275176..193275821(-) | ||
Located in intron of: | ENSMODG00000015109 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF9B | ||
Ensembl ID: | ENSMODG00000004077 | ||
Aliases: | None | ||
Description: | TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa [Source:HGNC Symbol;Acc:17306] |
Percent Identity: | 79.72 % |
Parental protein coverage: | 85.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QVMAQILKDMGITDYEPKVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADDVRLAIQCRSDQSFTSP |
QVMAQILKDMGIT.YEP.VINQMLEFAFRYVTTILDDAKIYSSHAKK..VDADDVRLAIQCR.DQSFT.P | |
Retrocopy | QVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPAVDADDVRLAIQCRADQSFTAP |
Parental | PPRDFLLDIARQKNQTPLPLIKPYSGLRLPPDRYCLTAPNYRLKPLPKKGPAPPGRITVPRLSVGAVSSR |
PPRDFLLDIARQKNQTPLPLIKPYSG.RLPPDRYCLTAPNYRLK.LPKK.P...GRITVPRLSVGAVSSR | |
Retrocopy | PPRDFLLDIARQKNQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLPKKVPSAAGRITVPRLSVGAVSSR |
Parental | PSTPTLGNPPAQP-VAAPNKAGAPASGPPPNQRFAVQMPPSQSAVAKPAAPAAPAVQNVMINPSLMGQKN |
P.TPTLG.P...P.VA.......P.S.....QRF.VQ.P.SQS...K.A.PAAP.VQNV.INPSL.G.KN | |
Retrocopy | PGTPTLGAPSSAPAVAVAADVATPLS--LAGQRFTVQIPASQSPAVKAAMPAAPSVQNVLINPSLIGSKN |
Parental | ILITTNV |
ILITTN. | |
Retrocopy | ILITTNM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |