RetrogeneDB ID: | retro_pabe_1634 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 19:30492443..30493214(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF9B | ||
Ensembl ID: | ENSPPYG00000020497 | ||
Aliases: | None | ||
Description: | Transcription initiation factor TFIID subunit 9B [Source:UniProtKB/Swiss-Prot;Acc:Q5R7P7] |
Percent Identity: | 73.75 % |
Parental protein coverage: | 90.61 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | DNMESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDA |
D.MESGKMA.PK..P.DA..MAQILKD.GITEYEPRVIN..LEFAF.YVTTILDDAKIYSS..KK..VDA | |
Retrocopy | DIMESGKMASPKSMPTDAQMMAQILKDLGITEYEPRVIN*TLEFAF*YVTTILDDAKIYSSRVKKATVDA |
Parental | DDVRLAIQCRADQSFTSPPPRD-FLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLIKK-G |
DDVRLAIQ..ADQSFTS.PPRD.FLLDIARQ.NQTP.PLIKPY.GPRLPPDRYCLTAPNYRLKSL.KK.. | |
Retrocopy | DDVRLAIQFHADQSFTSLPPRD>FLLDIARQRNQTPFPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKES |
Parental | PNQGR-LVPRLSVGAVSSKPTTPTIA--TPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVK-PVPATT |
...GR..VPRLSVG.V.S.P.TPT....TPQT.SV..KV.TP.S.T.QRFTVQ.P.SQS..VK...PAT. | |
Retrocopy | TSAGRVIVPRLSVGSVASRPSTPTLGTPTPQTMSVSTKVGTPVSLTGQRFTVQMPTSQSPAVKSSIPATS |
Parental | AVQNVLINPSMIGPKN-ILITTNMVSSQNTANE-ANPLKRKHEDDDDND |
AVQNVLINPS.IG.K...LIT.NMV.SQNTANE..N.LK...EDD.D.D | |
Retrocopy | AVQNVLINPSLIGSKS<LLITINMVLSQNTANESSNALKKREEDDGDYD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 9 .07 RPM |
SRP007412_cerebellum | 0 .00 RPM | 15 .69 RPM |
SRP007412_heart | 0 .03 RPM | 7 .19 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .07 RPM |
SRP007412_liver | 0 .00 RPM | 6 .24 RPM |