RetrogeneDB ID: | retro_pabe_941 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 12:75161576..75162094(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF9B | ||
Ensembl ID: | ENSPPYG00000020497 | ||
Aliases: | None | ||
Description: | Transcription initiation factor TFIID subunit 9B [Source:UniProtKB/Swiss-Prot;Acc:Q5R7P7] |
Percent Identity: | 54.02 % |
Parental protein coverage: | 59.57 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | SPPPRDFLLDIARQKNQTPLPLIKPYAGPRLP-PDRYCLTAPNYRLKSLIKKGPNQ-GRL-VPRLSVGAV |
S.P.R.FLLD.A.Q.N.TPLPLIKPY.GP....P.R.CL...NYRLKSL.KK.....GR...P.LS.G.V | |
Retrocopy | SSPLRAFLLDVASQRN*TPLPLIKPYLGPNSI>PNRHCLITSNYRLKSLQKKNSTSAGRVTIPWLSIGSV |
Parental | SSKPTTPTIA--TPQTVSVPNKVATPMSVTSQ-RFTVQIPPSQSTPVKP-VPATTAVQNVLINPSMIGPK |
.SK...PT....TPQ..SV..KV..PMS.T...RFTVQ...S..........AT..V..V.IN.S..... | |
Retrocopy | TSKSSNPTLGATTPQIMSVLTKVGSPMSHTGK>RFTVQLSASPTPAIEASISATSSVKSVPINQSLFRSE |
Parental | NILITTNMVSSQNTAN-EANPLKRKH-EDDDDND |
NILITTNM.SSQN.AN....P.KRKH.EDD.DND | |
Retrocopy | NILITTNMESSQNIANGSSSPFKRKH*EDDNDND |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 9 .07 RPM |
SRP007412_cerebellum | 0 .00 RPM | 15 .69 RPM |
SRP007412_heart | 0 .00 RPM | 7 .19 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .07 RPM |
SRP007412_liver | 0 .00 RPM | 6 .24 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_772 |