RetrogeneDB ID: | retro_ggor_1833 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:26549944..26550695(+) | ||
Located in intron of: | ENSGGOG00000002754 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF9B | ||
Ensembl ID: | ENSGGOG00000002470 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.72 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADD |
ME.GKMA.PKNAPRDALVMAQI.KDMGIT.Y.P.VINQ.LEFAFR.VTTILDDAKIYSSHAKKPNVDADD | |
Retrocopy | MELGKMALPKNAPRDALVMAQISKDMGITDYKPKVINQILEFAFRNVTTILDDAKIYSSHAKKPNVDADD |
Parental | VRLAIQCRAD-QSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLIKKGPNQ |
VRLAIQCRAD......PP.R.FLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLIKKGPNQ | |
Retrocopy | VRLAIQCRAD<SFTSLPP-RGFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLIKKGPNQ |
Parental | GRLVPRLSVGAVSSKPTTPTIATATPQTVSVPNKVATPMSVTSQRF-TVQIPPSQSTPVKPVPATTAVQN |
GRLV.RL.VGAVS.KPTTPTI...TP.TVSVPNKV..PMSVTSQRF.TVQIPPS.STPVKPVPATTAVQN | |
Retrocopy | GRLVLRLTVGAVSRKPTTPTI--VTPRTVSVPNKVSIPMSVTSQRF>TVQIPPSRSTPVKPVPATTAVQN |
Parental | VLINPSMIGPKNILITTNMVSSQNTANEANPLKR-KHEDDDDNDIM |
V..NPSMIGPKNILI..NMVSS.NTANEANPLKR.KHEDDDDND.M | |
Retrocopy | VPTNPSMIGPKNILIPINMVSS*NTANEANPLKR>KHEDDDDNDTM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .19 RPM | 17 .02 RPM |
SRP007412_cerebellum | 0 .35 RPM | 13 .32 RPM |
SRP007412_heart | 0 .03 RPM | 2 .69 RPM |
SRP007412_kidney | 0 .08 RPM | 17 .34 RPM |
SRP007412_liver | 0 .34 RPM | 11 .82 RPM |
SRP007412_testis | 0 .10 RPM | 16 .37 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2619 |
Pan troglodytes | retro_ptro_1765 |
Pongo abelii | retro_pabe_2341 |
Macaca mulatta | retro_mmul_1480 |