RetrogeneDB ID: | retro_fcat_260 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:136459284..136460031(-) | ||
Located in intron of: | ENSFCAG00000031227 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF9B | ||
Ensembl ID: | ENSFCAG00000025493 | ||
Aliases: | None | ||
Description: | TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa [Source:HGNC Symbol;Acc:17306] |
Percent Identity: | 81.12 % |
Parental protein coverage: | 93.46 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MESSKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADD |
M.S.KMA.PK..P.DA..MAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKK..VDADD | |
Retrocopy | MDSGKMASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADD |
Parental | VRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLIKK-GPNQ |
VRLAIQCRADQSFTSPPPRDFLLDIARQ.NQTPLPLIKPY.GPRLPPDRYCLTAPNYRLKSL.KK..... | |
Retrocopy | VRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASTSA |
Parental | GRL-VPRLSVGAVSSRPSTPTIA--TPQTASVPSKVAPPVSVTSQRFTVQIPPSQSTPVK-PVPATTAVQ |
GR..VPRLSVG.V.SRPSTPT....TPQT.SV..KV..P.S.T.QRFTVQ.P.SQS..VK...PAT.AVQ | |
Retrocopy | GRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSPTVKASIPATSAVQ |
Parental | NVLINPSIIGPKNILITTNMVSSQNTANES-NPLKRKHE |
NVLINPS.IG.KNILITTNMVSSQNTANES.N.LKRK.E | |
Retrocopy | NVLINPSLIGSKNILITTNMVSSQNTANESANALKRKRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 33 .86 RPM | 10 .10 RPM |
SRP017611_kidney | 20 .30 RPM | 9 .48 RPM |
SRP017611_liver | 19 .21 RPM | 5 .36 RPM |