RetrogeneDB ID: | retro_vpac_16 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_392:7658..8456(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSVPAG00000001892 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF9B | ||
Ensembl ID: | ENSVPAG00000001210 | ||
Aliases: | None | ||
Description: | TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa [Source:HGNC Symbol;Acc:17306] |
Percent Identity: | 74.36 % |
Parental protein coverage: | 98.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | NQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLIKK-GPNQGRL-VPRLSVGAVSSRPTTPTIA--TPQT |
NQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSL.KK.....GR..VPRLSVG.V.SRP.TPT....TPQT | |
Retrocopy | NQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQT |
Parental | VSVPNKVAPPVSVTSQRFTVQIPPSQSTPVK-PVPVTTAVQNVLINPSMIGPKNILITTNMVSSQNTANE |
.SV..KV..PVS.T.QRFTVQ.P.SQS..VK...P.T..VQNVLINPS.IG.KNILITTNMVSSQNTA.E | |
Retrocopy | MSVSTKVGTPVSLTGQRFTVQMPTSQSPAVKASIPATSTVQNVLINPSLIGSKNILITTNMVSSQNTASE |
Parental | -SNPLKRKHEDDDDND |
.S..LKRK.EDDDD.D | |
Retrocopy | SSSALKRKREDDDDDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |