RetrogeneDB ID: | retro_ogar_3100 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873715.1:1256001..1256752(-) | ||
Located in intron of: | ENSOGAG00000003167 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF9B | ||
Ensembl ID: | ENSOGAG00000011107 | ||
Aliases: | None | ||
Description: | TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa [Source:HGNC Symbol;Acc:17306] |
Percent Identity: | 72.94 % |
Parental protein coverage: | 95.35 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | ESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADDV |
ESGKMA.P...P.DA..M.QILKDMGITEYEPRVINQMLEFAF.YVTTILDDA.IYSSHAKK..VDA.DV | |
Retrocopy | ESGKMASPTSMPKDAQMMTQILKDMGITEYEPRVINQMLEFAF*YVTTILDDANIYSSHAKKATVDAEDV |
Parental | RLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLIKKGP-NQG |
RLAIQC.ADQSFTSPPPRDFLLDIARQ.NQTPLPL.KPY.GPR.PPDRYCLTAPNYRLKSL.KK.P...G | |
Retrocopy | RLAIQCGADQSFTSPPPRDFLLDIARQRNQTPLPLTKPYSGPRWPPDRYCLTAPNYRLKSLQKKAPASAG |
Parental | RV-VPRL---SVGAVSSRPT-TPTIATPQTVSIPNKVATPVSVASQRFTMQIPPSQTAPVKP-VPATTAV |
RV.VPRL...SV....S.PT.TP....PQT.S...KV.TP.S...QR.T.Q.PPSQ...VK...PAT.AV | |
Retrocopy | RVTVPRLCVGSVTSRPSTPT<TPP--SPQTMSVSTKVGTPTSLTGQRLTVQMPPSQSPAVKASIPATSAV |
Parental | QNVLINPSMIGPKNILITTNMVSSQNMANE-SNPLKRKHE-DDDN |
.NV.INPS.IG.KNIL.TTNMVSSQN.ANE.S..LKRK...DDD. | |
Retrocopy | *NVQINPSLIGSKNILLTTNMVSSQNTANESSSALKRKRV<DDDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |