RetrogeneDB ID: | retro_cpor_967 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_37:14817936..14818334(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF9B | ||
Ensembl ID: | ENSCPOG00000002098 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.18 % |
Parental protein coverage: | 53.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MEPGKMAPSKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTI-LDDAKIYSSHAKKPNVDAD |
MEPGKMA..K..P.DA...AQILKDMGITEYEPRVINQ.LEFAF.YVTTI.L.DAKIYSS.AKK..VD.D | |
Retrocopy | MEPGKMASPKRMPEDAQMTAQILKDMGITEYEPRVINQTLEFAFQYVTTI<LNDAKIYSSGAKKATVDTD |
Parental | DVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLIKK |
DVRL.I.C.AD.S..SPP.RDF.......K...P.......A.PRLPPD.YCLTAP.YRL.S..KK | |
Retrocopy | DVRLVI*CQADESCISPPQRDFFIIYSKTKKTNPFAIDQ--ASPRLPPDQYCLTAPTYRLRSSQKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .17 RPM | 2 .93 RPM |
SRP017611_kidney | 0 .00 RPM | 2 .30 RPM |
SRP017611_liver | 0 .00 RPM | 1 .22 RPM |
SRP040447_lung | 0 .03 RPM | 1 .87 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 1 .63 RPM |