Parental gene:

TAF9B, ENSPTRG00000022053

Aliases:None
Description:TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa [Source:HGNC Symbol;Acc:17306]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:X:78002133..78012378(-)


>ENSPTRG00000022053
ATGGAGTCGGGCAAGATGGCGCCTCCCAAGAACGCTCCGAGAGATGCCTTGGTGATGGCACAGATCCTGAAGGATATGGG
AATCACAGAATATGAACCAAGGGTTATAAATCAAATGTTGGAATTTGCTTTCCGTTATGTGACTACAATTCTGGATGATG
CAAAAATTTATTCGAGCCATGCTAAGAAACCTAATGTTGATGCAGATGATGTGAGACTGGCAATCCAGTGTCGTGCTGAC
CAATCTTTTACCTCTCCTCCCCCAAGAGATTTTTTACTGGATATCGCAAGGCAGAAAAATCAAACCCCTTTGCCACTGAT
TAAGCCATATGCAGGACCTAGACTGCCACCTGATAGATACTGCTTAACAGCTCCAAACTATAGGCTGAAGTCCTTAATTA
AAAAGGGACCTAACCAAGGGAGACTAGTTCCACGATTAAGTGTTGGTGCTGTTAGTAGCAAACCTACTACTCCTACTATA
GCAACCCCACAAACGGTGTCTGTCCCAAATAAAGTTGCAACTCCAATGTCAGTGACAAGCCAAAGATTTACGGTGCAGAT
TCCACCTTCTCAGTCCACACCTGTCAAACCAGTTCCTGCAACAACTGCAGTTCAAAATGTTCTGATAAATCCTTCAATGA
TTGGGCCCAAAAATATTCTTATTACCACCAACATGGTTTCGTCACAGAACACGGCCAATGAAGCAAACCCACTGAAGAGA
AAACATGATGATGATGATGACAATGATATTATGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 23 .33 RPM
SRP007412_cerebellum 17 .53 RPM
SRP007412_heart 17 .55 RPM
SRP007412_kidney 21 .55 RPM
SRP007412_liver 5 .11 RPM
SRP007412_testis 11 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017613 ortholog_one2one 1 retrogene
Bos taurus ENSBTAG00000000895 ortholog_one2one 1 retrogene
Canis familiaris ENSCAFG00000017278 ortholog_one2one 1 retrogene
Callithrix jacchus ENSCJAG00000019520 ortholog_one2one 1 retrogene
Cavia porcellus ENSCPOG00000002098 ortholog_one2one 2 retrogenes
Equus caballus ENSECAG00000010189 ortholog_one2one 1 retrogene
Erinaceus europaeus ENSEEUG00000010916 ortholog_one2one 1 retrogene
Felis catus ENSFCAG00000025493 ortholog_one2one 2 retrogenes
Homo sapiens ENSG00000187325 ortholog_one2one 1 retrogene
Gorilla gorilla ENSGGOG00000002470 ortholog_one2one 2 retrogenes
Macropus eugenii ENSMEUG00000009697 ortholog_one2one 1 retrogene
Myotis lucifugus ENSMLUG00000014581 ortholog_one2one 1 retrogene
Macaca mulatta ENSMMUG00000012875 ortholog_one2one 1 retrogene
Monodelphis domestica ENSMODG00000004077 ortholog_one2one 1 retrogene
Mustela putorius furo ENSMPUG00000000084 ortholog_one2one 1 retrogene
Mus musculus ENSMUSG00000047242 ortholog_one2one 1 retrogene
Nomascus leucogenys ENSNLEG00000001378 ortholog_one2one 5 retrogenes
Oryctolagus cuniculus ENSOCUG00000014717 ortholog_one2many 1 retrogene
Otolemur garnettii ENSOGAG00000011107 ortholog_one2one 3 retrogenes
Pongo abelii ENSPPYG00000020497 ortholog_one2one 4 retrogenes
Pteropus vampyrus ENSPVAG00000017408 ortholog_one2one 1 retrogene
Rattus norvegicus ENSRNOG00000002453 ortholog_one2one 1 retrogene
Sus scrofa ENSSSCG00000026714 ortholog_one2one 2 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000001982 ortholog_one2one 3 retrogenes
Tarsius syrichta ENSTSYG00000007968 ortholog_one2one 1 retrogene
Tursiops truncatus ENSTTRG00000015964 ortholog_one2one 1 retrogene
Vicugna pacos ENSVPAG00000001210 ortholog_one2one 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_772 53.41 66.14
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2. retro_ptro_1329 71.98 99.20
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3. retro_ptro_1765 87.80 100.00
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4. retro_ptro_2145 81.78 96.02
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Download FASTA sequences of all ENSPTRG00000022053 retrocopies