RetrogeneDB ID: | retro_cfam_192 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 2:54404046..54404844(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000007766 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF9B | ||
Ensembl ID: | ENSCAFG00000017278 | ||
Aliases: | None | ||
Description: | TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa [Source:HGNC Symbol;Acc:17306] |
Percent Identity: | 78.87 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADD |
MESGKMA.PK..P.DA..MAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKK..VDADD | |
Retrocopy | MESGKMASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADD |
Parental | VRLAIQCRADQSFTSPPPRDFILHIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLIKK-GPNQ |
VRLAIQCRADQSFTSPPPRDF.L.IARQ.NQTPLPLIKPY.GPRLPPDRYCLTAPNYRLKSL.KK..... | |
Retrocopy | VRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASTSA |
Parental | GRL-VPRLSVGAISSRPSTPTVATATPQTASVPNKVAPPVSVTSQRFTVQIPPSQSTPVKSGFPATTAVQ |
GR..VPRLSVG...SRPSTPT..T.TPQT.SV..KV..P.S.T.QRFTVQ.P.SQS..VK...PAT.AVQ | |
Retrocopy | GRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSPTVKASIPATSAVQ |
Parental | NVLINPSIIGPKNILITTNMVSSQNMANE-SNPLKRKHEDDDDDDNDTIFILENL |
NVLINPS.IG.KNILITTNMVSSQN..NE.SN.LKRK.EDDDDDD.D......NL | |
Retrocopy | NVLINPSLIGSKNILITTNMVSSQNTSNESSNALKRKREDDDDDDDDDDDDYDNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 19 .95 RPM | 6 .72 RPM |
SRP017611_brain | 13 .42 RPM | 2 .38 RPM |
SRP017611_kidney | 25 .36 RPM | 4 .36 RPM |
SRP017611_liver | 8 .12 RPM | 0 .58 RPM |