RetrogeneDB ID: | retro_ggor_45 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 20:41392257..41393052(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000004126 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF9B | ||
Ensembl ID: | ENSGGOG00000002470 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.96 % |
Parental protein coverage: | 99.21 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADD |
MESGKMA.PK..P.DA..MAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKK..VDADD | |
Retrocopy | MESGKMASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADD |
Parental | VRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLIKK-GPNQ |
VRLAIQCRADQSFTSPPPRDFLLDIARQ.NQTPLPLIKPY.GPRLPPDRYCLTAPNYRLKSL.KK..... | |
Retrocopy | VRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASTSA |
Parental | GRL-VPRLSVGAVSSKPTTPTIATATPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVK-PVPATTAVQ |
GR..VPRLSVG.V.S.P.TPT..T.TPQT.SV..KV.TPMS.T.QRFTVQ.P.SQS..VK...PAT.AVQ | |
Retrocopy | GRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSPAVKASIPATSAVQ |
Parental | NVLINPSMIGPKNILITTNMVSSQNTANE-ANPLKRKHEDDDDND |
NVLINPS.IG.KNILITTNMVSSQNTANE..N.LKRK.EDDDD.D | |
Retrocopy | NVLINPSLIGSKNILITTNMVSSQNTANESSNALKRKREDDDDDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 3 .21 RPM | 17 .02 RPM |
SRP007412_cerebellum | 2 .95 RPM | 13 .32 RPM |
SRP007412_heart | 0 .72 RPM | 2 .69 RPM |
SRP007412_kidney | 3 .03 RPM | 17 .34 RPM |
SRP007412_liver | 2 .51 RPM | 11 .82 RPM |
SRP007412_testis | 21 .13 RPM | 16 .37 RPM |