RetrogeneDB ID: | retro_ogar_1128 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873536.1:5540448..5541198(-) | ||
Located in intron of: | ENSOGAG00000027736 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF9B | ||
Ensembl ID: | ENSOGAG00000011107 | ||
Aliases: | None | ||
Description: | TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa [Source:HGNC Symbol;Acc:17306] |
Percent Identity: | 79.6 % |
Parental protein coverage: | 94.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADD |
MESGKMA.PK..P.DA..MAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKK..VDADD | |
Retrocopy | MESGKMASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADD |
Parental | VRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLIKK-GPNQ |
VRLAIQCRADQSFTSPPPRDFLLDIARQ.NQTPLPLIKPY.GPRLPPDRYCLTAPNYRLKSL.KK..... | |
Retrocopy | VRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASASA |
Parental | GRV-VPRLSVGAVSSRPTTPTIA--TPQTVSIPNKVATPVSVASQRFTMQIPPSQTAPVK-PVPATTAVQ |
GR..VPRLSVG.V.SRP.TPT....TPQT.S...KV.TP.S...QRFT.Q.PPSQ...VK...PAT.AVQ | |
Retrocopy | GRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPPSQSPAVKASIPATSAVQ |
Parental | NVLINPSMIGPKNILITTNMVSSQNMANE-SNPLKRKHED |
NVLINPS.IG.KNILITTNMVSSQN.ANE.S..LKRK.E. | |
Retrocopy | NVLINPSLIGSKNILITTNMVSSQNTANESSSALKRKREE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |