RetrogeneDB ID: | retro_btau_838 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 2:119666467..119666810(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G3 | ||
Ensembl ID: | ENSBTAG00000002944 | ||
Aliases: | None | ||
Description: | ATP synthase lipid-binding protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q3ZC75] |
Percent Identity: | 73.5 % |
Parental protein coverage: | 80.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | AKLACTPAL-IRAGSRVAYRPISASVLSRPETRTGEGCTVFNGTQNGVSQLIQREF-QTTAVNRDIDTAA |
....C.PA....AGSRVA.RPISASVLSR...RT.EG..VF.G.QNGVSQLIQREF.QT.AV.RD..TAA | |
Retrocopy | SQASCLPAPPLQAGSRVAGRPISASVLSRLKARTAEGSAVFSGAQNGVSQLIQREF<QTSAVSRDAETAA |
Parental | KFIGA-GAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAIL |
.FIGA...AT.GVAGS.AGIGTVFGSLII.YARNP.LKQQLFSYAIL | |
Retrocopy | TFIGA<TCATTGVAGSSAGIGTVFGSLIIDYARNPFLKQQLFSYAIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 56 .52 RPM | 60 .92 RPM |
ERP005899_muscle | 3 .33 RPM | 231 .64 RPM |
SRP017611_brain | 12 .52 RPM | 59 .57 RPM |
SRP017611_kidney | 1 .07 RPM | 216 .34 RPM |
SRP017611_liver | 29 .07 RPM | 51 .57 RPM |
SRP030211_testis | 0 .51 RPM | 25 .89 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002944 | 1 retrocopy |
retro_btau_838 ,
|
Bos taurus | ENSBTAG00000005735 | 11 retrocopies | |
Bos taurus | ENSBTAG00000018339 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000013366 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000012592 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000008207 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000010440 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000010768 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012822 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003954 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009520 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000012159 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011524 | 3 retrocopies |