RetrogeneDB ID: | retro_cfam_5 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 14:7516958..7517378(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000001530 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G3 | ||
Ensembl ID: | ENSCAFG00000013366 | ||
Aliases: | LOC478807, ATP5G3 | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) [Source:HGNC Symbol;Acc:843] |
Percent Identity: | 71.94 % |
Parental protein coverage: | 98.58 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ACAKLACAPALIRAGSRVAYRPISASVLYRPEARPGERSTVFNGAQNGVSQRIQREFQTSAISRDIDTAA |
ACAK....P.L.R..S....R..SA.VL..PE.................S....R.FQTSAISRDIDTAA | |
Retrocopy | ACAKFVSTPFLVRSTSQLLSRSLSAVVLKPPETLTDQSLSSLTAPHPLTSLIPSRSFQTSAISRDIDTAA |
Parental | KFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM |
KFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM | |
Retrocopy | KFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 13 .82 RPM | 133 .43 RPM |
SRP017611_brain | 5 .16 RPM | 80 .50 RPM |
SRP017611_kidney | 16 .91 RPM | 358 .32 RPM |
SRP017611_liver | 8 .77 RPM | 79 .47 RPM |