RetrogeneDB ID:

retro_btau_737

Retrocopy
location
Organism:Cow (Bos taurus)
Coordinates:18:59217246..59217594(-)
Located in intron of:ENSBTAG00000037440
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ATP5G2
Ensembl ID:ENSBTAG00000005735
Aliases:None
Description:ATP synthase lipid-binding protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P07926]


Retrocopy-Parental alignment summary:






>retro_btau_737
ATGGACACCTGTGCCAAATTAGTCTCTACCCTCTCCCTGATGGGGAGAACCTCCCCCTTGTTGAGTGATCACTGTCTGCA
GTGGTGGTGAAGGACTGGAGACACTGACTGATGAGAGCCACAGCAGCTTGGCAGCCCCAGGTCGCCGGACCATCTCACTT
ATTCCTAGCCACAGCTTCCAAACCAGTGCCATTTCAAAGGACTCTGACACAGCAGCCAAGTTCCCTGCCACAGCAGGGGT
GGCTGGCTCCAGGGCTGGAAGTGGGACTGTGTTCGGGAGCTTCATCACTGTTATGCCAGGAACCCTTCTCTCAAACAGGA
GCTCTTCTACGCCATGGGCTTGGCCCTC

ORF - retro_btau_737 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.5 %
Parental protein coverage: 86.71 %
Number of stop codons detected: 0
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMYTCAKFVSTPSLIRRTSTVLSR-SLSAVVVRR-PETLTDESHSSLAVVPRPLTTSLTPSRSFQTSAISR
M.TCAK.VST.SL..RTS..LS..SLSAVVV....ETLTDESHSSLA..P...T.SL.PS.SFQTSAIS.
RetrocopyMDTCAKLVSTLSLMGRTSPLLSD<SLSAVVVKD<LETLTDESHSSLAA-PGRRTISLIPSHSFQTSAISK
ParentalDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLII-GYARNPSLKQQLFSYAILGFAL
D.DTAAKF.....AT.GVAGS.AG.GTVFGS.I...YARNPSLKQ.LF.YA..G.AL
RetrocopyDSDTAAKF----PATAGVAGSRAGSGTVFGSFIT<CYARNPSLKQELF-YA-MGLAL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
ERP005899_liver 0 .00 RPM 36 .77 RPM
ERP005899_muscle 0 .05 RPM 307 .02 RPM
SRP017611_brain 0 .09 RPM 53 .81 RPM
SRP017611_kidney 0 .18 RPM 138 .22 RPM
SRP017611_liver 0 .00 RPM 52 .78 RPM
SRP030211_testis 0 .09 RPM 29 .04 RPM
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_737 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_737 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_btau_737 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 31 parental genes, and 255 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000000061918 retrocopies
Bos taurus ENSBTAG000000029441 retrocopy
Bos taurus ENSBTAG00000005735 11 retrocopies
Bos taurus ENSBTAG000000183393 retrocopies
Cavia porcellus ENSCPOG000000228893 retrocopies
Equus caballus ENSECAG000000230212 retrocopies
Erinaceus europaeus ENSEEUG000000030511 retrocopy
Echinops telfairi ENSETEG0000000596840 retrocopies
Felis catus ENSFCAG0000000150213 retrocopies
Homo sapiens ENSG000001353906 retrocopies
Gorilla gorilla ENSGGOG000000156415 retrocopies
Macropus eugenii ENSMEUG0000000466167 retrocopies
Microcebus murinus ENSMICG000000116864 retrocopies
Myotis lucifugus ENSMLUG0000001186013 retrocopies
Macaca mulatta ENSMMUG000000162413 retrocopies
Mustela putorius furoENSMPUG000000059276 retrocopies
Mus musculus ENSMUSG000000626831 retrocopy
Nomascus leucogenys ENSNLEG000000176864 retrocopies
Oryctolagus cuniculus ENSOCUG000000089334 retrocopies
Otolemur garnettii ENSOGAG000000036114 retrocopies
Ochotona princeps ENSOPRG000000029781 retrocopy
Procavia capensis ENSPCAG000000086793 retrocopies
Pongo abelii ENSPPYG000000045867 retrocopies
Pan troglodytes ENSPTRG000000050236 retrocopies
Pteropus vampyrus ENSPVAG000000122911 retrocopy
Rattus norvegicus ENSRNOG000000153206 retrocopies
Sorex araneus ENSSARG000000010277 retrocopies
Sarcophilus harrisii ENSSHAG000000057264 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000082173 retrocopies
Tupaia belangeri ENSTBEG000000057484 retrocopies
Tarsius syrichta ENSTSYG000000034334 retrocopies



Copyright © RetrogeneDB 2014-2017