RetrogeneDB ID: | retro_cfam_4 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 14:7710940..7711366(-) | ||
Located in intron of: | ENSCAFG00000001543 | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000029750 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G3 | ||
Ensembl ID: | ENSCAFG00000013366 | ||
Aliases: | LOC478807, ATP5G3 | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) [Source:HGNC Symbol;Acc:843] |
Percent Identity: | 88.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLACAKLACAPALIRAGSRVAYRPISASVLYRPEARPGERSTVFNGAQNGVSQRIQREFQTSAISRDIDT |
M.ACAKLAC.P.LIRAGSRVAYRPISAS.LYRPEAR.GE.STVFN.AQNGV.Q.IQREF.TSAI.RDIDT | |
Retrocopy | MFACAKLACIPVLIRAGSRVAYRPISASLLYRPEARTGEHSTVFNRAQNGVPQLIQREFPTSAIRRDIDT |
Parental | AAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA |
AAKFIGAGAATVGVAGSGAGIGTVFGS.I.GYARNP.LKQQ.FSYAILGFALSEA.GLFCLMVAFLILFA | |
Retrocopy | AAKFIGAGAATVGVAGSGAGIGTVFGSFITGYARNPLLKQQQFSYAILGFALSEALGLFCLMVAFLILFA |
Parental | M |
M | |
Retrocopy | M |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .08 RPM | 133 .43 RPM |
SRP017611_brain | 0 .00 RPM | 80 .50 RPM |
SRP017611_kidney | 0 .13 RPM | 358 .32 RPM |
SRP017611_liver | 0 .07 RPM | 79 .47 RPM |