RetrogeneDB ID: | retro_mdom_545 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 1:257316934..257317348(-) | ||
Located in intron of: | ENSMODG00000007703 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000009520 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.82 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MFACAKLACSPALIRAGSRIVYRPISAAVLSRPEVRTGEGNTVSNGAQNRVSQLALREFQTSAISRDVDT |
.F..AKLAC...LIRAGSRIVYR.IS.AVLSR..VR.GEGNTVSNG.QNRVSQLALREFQTSAI.RDVDT | |
Retrocopy | IFT*AKLAC---LIRAGSRIVYRSISSAVLSRQKVRPGEGNTVSNGTQNRVSQLALREFQTSAIRRDVDT |
Parental | AAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA |
AAKFIGAGAATV.V.GS.AGIGT.FGSLIIGYARNPSLKQQLFSYAIL.F.LSEAMGLFCLMVAFLILFA | |
Retrocopy | AAKFIGAGAATV*VVGSDAGIGTIFGSLIIGYARNPSLKQQLFSYAILEFTLSEAMGLFCLMVAFLILFA |
Parental | L |
. | |
Retrocopy | M |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .95 RPM | 0 .00 RPM |
SRP007412_cerebellum | 1 .31 RPM | 0 .00 RPM |
SRP007412_heart | 0 .20 RPM | 0 .00 RPM |
SRP007412_kidney | 1 .32 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .79 RPM | 0 .00 RPM |