RetrogeneDB ID: | retro_btau_994 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 22:44127325..44127609(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSBTAG00000005735 | ||
Aliases: | None | ||
Description: | ATP synthase lipid-binding protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P07926] |
Percent Identity: | 62.75 % |
Parental protein coverage: | 70.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LSRSLSAVVVRRPETLTDESHSSLAVVPRPLTTSLTPSRSFQTSAIS-RDIDTAAKFIGAGAATVGVAGS |
.S.SL.AVV......LTD.S.SSLA....PLT..L.P...FQ.SAI..RDIDTA.K..GAGAATVGV... | |
Retrocopy | VSGSLAAVVMKQLKMLTDQSLSSLAA-SGPLTL-LIPRHNFQRSAIL<RDIDTAGKYTGAGAATVGV--- |
Parental | GAGIGTVFGSLIIGYARNPSLKQQLFSYAILG |
.AGI.T.FGSLII.Y.RN.SL.QQLF.YAILG | |
Retrocopy | -AGIRTLFGSLIIAYSRNSSLMQQLFFYAILG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 36 .77 RPM |
ERP005899_muscle | 0 .11 RPM | 307 .02 RPM |
SRP017611_brain | 0 .14 RPM | 53 .81 RPM |
SRP017611_kidney | 0 .06 RPM | 138 .22 RPM |
SRP017611_liver | 0 .00 RPM | 52 .78 RPM |
SRP030211_testis | 0 .01 RPM | 29 .04 RPM |
Species | RetrogeneDB ID |
---|---|
Equus caballus | retro_ecab_373 |