Parental gene: | ENSCJAG00000008207 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 6:43234274..43237386(+) |
>ENSCJAG00000008207
ATGTTCGCCTGCGCCAAGCTCGCCTGCACCCCCGCTCTGATCCGAGCTGGATCCAGAGTTGCATACAGACCGATTTCTGC
ATCAGTGTTATCTCGACCAGAGACTAGGAATGGAGAGGGCTCTACGGTATTTAATGGGGCCCAGAATGGTGTATCTCAGC
TAATCCAAAGGGAGTTTCAGACCAGTGCAATCAGCAGAGACATTGATACTGCTGCCAAATTTATTGGTGCAGGTGCTGCA
ACGGTAGGAGTGGCTGGTTCTGGTGCTGGTATTGGAACAGTCTTTGGCAGCCTTATCATTGGTTATGCCAGAAACCCTTC
GCTGAAGCAGCAGCTGTTCTCATATGCTATCCTGGGATTTGCCTTGTCTGAAGCTATGGGTCTCTTTTGTTTGATGGTTG
CTTTCTTGATTTTGTTTGCCATGTAA
ATGTTCGCCTGCGCCAAGCTCGCCTGCACCCCCGCTCTGATCCGAGCTGGATCCAGAGTTGCATACAGACCGATTTCTGC
ATCAGTGTTATCTCGACCAGAGACTAGGAATGGAGAGGGCTCTACGGTATTTAATGGGGCCCAGAATGGTGTATCTCAGC
TAATCCAAAGGGAGTTTCAGACCAGTGCAATCAGCAGAGACATTGATACTGCTGCCAAATTTATTGGTGCAGGTGCTGCA
ACGGTAGGAGTGGCTGGTTCTGGTGCTGGTATTGGAACAGTCTTTGGCAGCCTTATCATTGGTTATGCCAGAAACCCTTC
GCTGAAGCAGCAGCTGTTCTCATATGCTATCCTGGGATTTGCCTTGTCTGAAGCTATGGGTCTCTTTTGTTTGATGGTTG
CTTTCTTGATTTTGTTTGCCATGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 13 .38 RPM |
| SRP051959_skeletal_muscle | 68 .35 RPM |
| SRP051959_lymph_node | 12 .12 RPM |
| SRP051959_lung | 11 .14 RPM |
| SRP051959_liver | 45 .68 RPM |
| SRP051959_kidney | 48 .57 RPM |
| SRP051959_heart | 68 .53 RPM |
| SRP051959_colon | 43 .18 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000012367 | possible_ortholog | 1 retrogene | |
| Bos taurus | ENSBTAG00000002944 | possible_ortholog | 1 retrogene | |
| Canis familiaris | ENSCAFG00000013366 | possible_ortholog | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000012592 | ortholog_one2many | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000007352 | within_species_paralog | 7 retrogenes | |
| Cavia porcellus | ENSCPOG00000006194 | possible_ortholog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000010440 | ortholog_one2many | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000010768 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000012822 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000003954 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000009520 | ortholog_many2many | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000013986 | possible_ortholog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000012164 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000027578 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000001596 | possible_ortholog | 1 retrogene | |
| Sorex araneus | ENSSARG00000006733 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000013572 | possible_ortholog | 4 retrogenes | |
| Tupaia belangeri | ENSTBEG00000012159 | ortholog_many2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000011524 | possible_ortholog | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_38 | 100.00 | 60.28 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_279 | 54.61 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_4183 | 95.04 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000008207 retrocopies