Parental gene:

ENSCJAG00000008207

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:6:43234274..43237386(+)


>ENSCJAG00000008207
ATGTTCGCCTGCGCCAAGCTCGCCTGCACCCCCGCTCTGATCCGAGCTGGATCCAGAGTTGCATACAGACCGATTTCTGC
ATCAGTGTTATCTCGACCAGAGACTAGGAATGGAGAGGGCTCTACGGTATTTAATGGGGCCCAGAATGGTGTATCTCAGC
TAATCCAAAGGGAGTTTCAGACCAGTGCAATCAGCAGAGACATTGATACTGCTGCCAAATTTATTGGTGCAGGTGCTGCA
ACGGTAGGAGTGGCTGGTTCTGGTGCTGGTATTGGAACAGTCTTTGGCAGCCTTATCATTGGTTATGCCAGAAACCCTTC
GCTGAAGCAGCAGCTGTTCTCATATGCTATCCTGGGATTTGCCTTGTCTGAAGCTATGGGTCTCTTTTGTTTGATGGTTG
CTTTCTTGATTTTGTTTGCCATGTAA

Library Parental gene expression (RPM)
SRP051959_colon 43 .18 RPM
SRP051959_heart 68 .53 RPM
SRP051959_kidney 48 .57 RPM
SRP051959_liver 45 .68 RPM
SRP051959_lung 11 .14 RPM
SRP051959_lymph_node 12 .12 RPM
SRP051959_skeletal_muscle 68 .35 RPM
SRP051959_spleen 13 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012367 possible_ortholog 1 retrogene
retro_amel_1829,
Bos taurus ENSBTAG00000002944 possible_ortholog 1 retrogene
retro_btau_838,
Canis familiaris ENSCAFG00000013366 possible_ortholog 2 retrogenes
retro_cfam_4, retro_cfam_5,
Choloepus hoffmanni ENSCHOG00000012592 ortholog_one2many 3 retrogenes
retro_chof_189, retro_chof_2561, retro_chof_508,
Callithrix jacchus ENSCJAG00000007352 within_species_paralog 7 retrogenes
retro_cjac_1190, retro_cjac_1549, retro_cjac_161, retro_cjac_1878, retro_cjac_289, retro_cjac_4060, retro_cjac_679,
Cavia porcellus ENSCPOG00000006194 possible_ortholog 1 retrogene
retro_cpor_479,
Dasypus novemcinctus ENSDNOG00000010440 ortholog_one2many 2 retrogenes
retro_dnov_235, retro_dnov_396,
Loxodonta africana ENSLAFG00000010768 possible_ortholog 1 retrogene
retro_lafr_120,
Myotis lucifugus ENSMLUG00000012822 possible_ortholog 1 retrogene
retro_mluc_23,
Macaca mulatta ENSMMUG00000003954 possible_ortholog 1 retrogene
retro_mmul_148,
Monodelphis domestica ENSMODG00000009520 ortholog_many2many 3 retrogenes
retro_mdom_1070, retro_mdom_295, retro_mdom_545,
Mustela putorius furo ENSMPUG00000013986 possible_ortholog 1 retrogene
retro_mputfur_818,
Oryctolagus cuniculus ENSOCUG00000012164 possible_ortholog 1 retrogene
retro_ocun_949,
Otolemur garnettii ENSOGAG00000027578 possible_ortholog 1 retrogene
retro_ogar_1938,
Rattus norvegicus ENSRNOG00000001596 possible_ortholog 1 retrogene
retro_rnor_1106,
Sorex araneus ENSSARG00000006733 possible_ortholog 1 retrogene
retro_sara_82,
Ictidomys tridecemlineatus ENSSTOG00000013572 possible_ortholog 4 retrogenes
retro_itri_1091, retro_itri_1236, retro_itri_324, retro_itri_438,
Tupaia belangeri ENSTBEG00000012159 ortholog_many2many 1 retrogene
retro_tbel_54,
Tursiops truncatus ENSTTRG00000011524 possible_ortholog 3 retrogenes
retro_ttru_268, retro_ttru_510, retro_ttru_588,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_38 100.00 60.28
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2. retro_cjac_279 54.61 100.00
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3. retro_cjac_4183 95.04 100.00
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Download FASTA sequences of all ENSCJAG00000008207 retrocopies