RetrogeneDB ID: | retro_dnov_396 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_4358:130752..131098(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G3 | ||
Ensembl ID: | ENSDNOG00000010440 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) [Source:HGNC Symbol;Acc:843] |
Percent Identity: | 77.97 % |
Parental protein coverage: | 82.27 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | AYRPISASVLSRPE-DRTGEGSTVFSRAHNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGV-AGSG |
AYR.I.AS.LS..E.D.TGE.STVFS.A.NGVS.LIQREFQTSAISR.I.TA.KFIGAGAATVG..AGS. | |
Retrocopy | AYR*IFASLLS*LE<DKTGEDSTVFS*A*NGVS*LIQREFQTSAISRGIETAVKFIGAGAATVGG<AGSI |
Parental | AGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFL |
AGIGTVFGSLI.GY.RNP.LK..LFSYAILGF..SEAMGLFCL.V.FL | |
Retrocopy | AGIGTVFGSLIFGYVRNPLLKKHLFSYAILGFPFSEAMGLFCLKVDFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 711 .17 RPM |
SRP012922_cerebellum | 0 .69 RPM | 190 .53 RPM |
SRP012922_heart | 0 .00 RPM | 581 .47 RPM |
SRP012922_kidney | 0 .00 RPM | 360 .86 RPM |
SRP012922_liver | 0 .00 RPM | 202 .64 RPM |
SRP012922_lung | 0 .46 RPM | 74 .22 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 368 .32 RPM |
SRP012922_spleen | 0 .23 RPM | 86 .65 RPM |