RetrogeneDB ID: | retro_btau_735 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 18:59093134..59093551(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSBTAG00000005735 | ||
Aliases: | None | ||
Description: | ATP synthase lipid-binding protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P07926] |
Percent Identity: | 69.86 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MYTCAKFVSTPSLIRRTSTVLSR-SLSAVVVRR-PETLTDESHSSLAVVPRPLTTSLTPSRSFQTSAISR |
M.TCAK.VST.SLI.RTS..LS..SLSAVVV...PETLTDES.SSL.V.P.P.TTSL.PS..FQTSAISR | |
Retrocopy | MDTCAKLVSTLSLIGRTSPLLSD<SLSAVVVKD<PETLTDESQSSL-VAPGPQTTSLIPSHIFQTSAISR |
Parental | DIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYA-RNPSLKQQLFSYAILGFALSEAMGLFCLMVAF |
D.DTA.KF.GAGAAT.GVAGSGAG.GTVF.S.......RNPSLKQ.LF.....G.ALS.AMGLFCLMV.. | |
Retrocopy | DSDTADKFPGAGAATAGVAGSGAGTGTVFRSFTAVVS<RNPSLKQ*LF--YTMGLALSKAMGLFCLMVV* |
Parental | LILFAM |
LI.F.M | |
Retrocopy | LIFFTM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .14 RPM | 36 .77 RPM |
ERP005899_muscle | 0 .00 RPM | 307 .02 RPM |
SRP017611_brain | 0 .00 RPM | 53 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 138 .22 RPM |
SRP017611_liver | 0 .00 RPM | 52 .78 RPM |
SRP030211_testis | 0 .05 RPM | 29 .04 RPM |