RetrogeneDB ID: | retro_mmul_148 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 7:30799651..30800077(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSMMUG00000029649 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MMU.3119 | ||
| Ensembl ID: | ENSMMUG00000003954 | ||
| Aliases: | None | ||
| Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) [Source:RefSeq peptide;Acc:NP_001185663] |
Retrocopy-Parental alignment summary:
>retro_mmul_148
ATGTTCGCCTGCGCCAAGCTCGCCTGCACGCCCGCTCTGATCCGAGCTGGATCCAGAGTTGCATACAGACCAATTTCTGC
ATCAGTGTTATCTCGACCAGAGGCTAGGACTGGAGAGGGCTCTACGGTATTTAATGGGGCCCAGAATGGTGTGTCTCAGC
TAATCCAAAGGGAGTTTCAGACCAGTGCAATCAGCAGAGACATTGATACTGCTGCCAAATTTATTGGTGCAGGTGCTGCA
ACAGTAGGAGTGGCTGGTTCTGGTGCTGGTATTGGAACAGTCTTTGGCAGCCTTATCATTGGTTATGCCAGAAACCCTTC
GCTGAAGCAGCAGCTGTTCTCATATGCTATCCTGGGATTTGCCTTGTCTGAAGCTATGGGTCTCTTTTGTTTGATGGTTG
CTTTCTTGATTTTGTTTGCCATGTAA
ORF - retro_mmul_148 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 100.0 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MFACAKLACTPALIRAGSRVAYRPISASVLSRPEARTGEGSTVFNGAQNGVSQLIQREFQTSAISRDIDT |
| MFACAKLACTPALIRAGSRVAYRPISASVLSRPEARTGEGSTVFNGAQNGVSQLIQREFQTSAISRDIDT | |
| Retrocopy | MFACAKLACTPALIRAGSRVAYRPISASVLSRPEARTGEGSTVFNGAQNGVSQLIQREFQTSAISRDIDT |
| Parental | AAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA |
| AAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA | |
| Retrocopy | AAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA |
| Parental | M |
| M | |
| Retrocopy | M |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 18 .94 RPM |
| SRP007412_brain_prefrontal_cortex | 8 .41 RPM | 75 .68 RPM |
| SRP007412_cerebellum | 0 .13 RPM | 17 .56 RPM |
| SRP007412_heart | 0 .41 RPM | 96 .16 RPM |
| SRP007412_kidney | 0 .23 RPM | 46 .71 RPM |
| SRP007412_liver | 0 .16 RPM | 53 .72 RPM |
| SRP007412_testis | 0 .04 RPM | 4 .71 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_148 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_148 was not experimentally validated.