RetrogeneDB ID: | retro_cpor_1037 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_4:24415466..24415886(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000004543 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.69 % |
Parental protein coverage: | 73.2 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE |
..KRL.VDKWWGNR.EL.T..TICSHVQNMIK.V.LGF.YKM..VYAHFPINVVIQE..SLVE..NFL.. | |
Retrocopy | ERKRLQVDKWWGNRTELFTICTICSHVQNMIKEVNLGFCYKMKPVYAHFPINVVIQESESLVEKWNFLDK |
Parental | KYIRRVR-MRAVGVACSVSQAQKDELILEGNDIELVSNSVAALIQQATTVKNKDIRKF-LDGIYVSEKGT |
.YIR.VR.MRA.GV.CSVS.AQK.E.IL.GND.ELVSNS.AALIQQATT..NKDIRKF.LD.IYVSEKGT | |
Retrocopy | IYIRWVR>MRA-GVTCSVS*AQKHEVILDGNDTELVSNS-AALIQQATTI*NKDIRKF<LDAIYVSEKGT |
Parental | VQQP |
V..P | |
Retrocopy | VIPP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 84 .20 RPM |
SRP017611_kidney | 0 .00 RPM | 197 .34 RPM |
SRP017611_liver | 0 .09 RPM | 143 .12 RPM |
SRP040447_lung | 0 .05 RPM | 176 .34 RPM |
SRP040447_skeletal_muscle | 0 .04 RPM | 206 .16 RPM |