RetrogeneDB ID: | retro_cpor_530 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_18:26877875..26878281(-) | ||
Located in intron of: | ENSCPOG00000012440 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000004543 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.23 % |
Parental protein coverage: | 72.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | RRDFNHINVELSLLGKKKKRLRVDKWW-GNRKELATVRTICSHVQNMI-KGVTLGFRYKMRSVYAHFPIN |
R.DF.HI.VE.SLLG.KK.RL.VDK.W....KELAT...ICS.VQ..I.K.VTLGF.Y.MRSVYAHFPIN | |
Retrocopy | RGDFSHISVEHSLLGRKK-RLQVDK-W>RKTKELATICMICSQVQKII<KHVTLGFCYNMRSVYAHFPIN |
Parental | VVIQENGSLVEIRNFLG-EKYIRRVRMRAVGVACSVSQAQKDELILEGNDIELVSNSVAALIQQATTVKN |
.VIQE..S......FLG.EK.I..V.....GVACSVSQAQK..LILEGNDIE.VSNS.AALIQQATTVKN | |
Retrocopy | MVIQEKVSCGN-TEFLG>EKFISQV-YKGAGVACSVSQAQKNKLILEGNDIEFVSNS-AALIQQATTVKN |
Parental | KDI |
KDI | |
Retrocopy | KDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .12 RPM | 84 .20 RPM |
SRP017611_kidney | 0 .31 RPM | 197 .34 RPM |
SRP017611_liver | 0 .13 RPM | 143 .12 RPM |
SRP040447_lung | 0 .03 RPM | 176 .34 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 206 .16 RPM |