RetrogeneDB ID: | retro_itri_305 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393283.1:24700856..24701432(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL9 | ||
Ensembl ID: | ENSSTOG00000002077 | ||
Aliases: | None | ||
Description: | ribosomal protein L9 [Source:HGNC Symbol;Acc:10369] |
Percent Identity: | 86.46 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATV |
MK.ILS.QTVDIPE.VD.TLKG.TVIVKGPR.T..RDFNHINVELS.LGKK.KRL.VDKWWGNRKELATV | |
Retrocopy | MKIILSTQTVDIPEHVDTTLKGCTVIVKGPR*TFQRDFNHINVELSILGKKNKRLWVDKWWGNRKELATV |
Parental | RTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQ |
RTICSH.QNMIKGV...FRYKMRSVYAH.PINVVIQEN.SLVEI..F.GEKYIRRV.MRT.VACSVSQAQ | |
Retrocopy | RTICSHAQNMIKGVKVDFRYKMRSVYAHVPINVVIQENESLVEIQIFWGEKYIRRVQMRTSVACSVSQAQ |
Parental | KDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQADE |
KDELIL.GNDIELVSNSAALI.QAT.VKNKDIRKFLDG.YVSEKGTVQQADE | |
Retrocopy | KDELILQGNDIELVSNSAALI*QATAVKNKDIRKFLDGLYVSEKGTVQQADE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |