RetrogeneDB ID: | retro_cpor_628 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_20:11303047..11303338(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000004543 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.75 % |
Parental protein coverage: | 52.58 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATV |
MK.....QT.DI.EN.D.TLKG..VI.KGP...L.RDFNH.NVEL.LLGK.KKR..VDKW.GNRKEL.T. | |
Retrocopy | MKITFRSQTSDILENADVTLKG*-VILKGPSESLLRDFNHANVELGLLGKTKKRFQVDKW*GNRKEL*T- |
Parental | RTICSHVQNMIKGVTLGFRYKMRSVYAHFPIN |
..I..H...M.K.V.LGF..KM.SVYAHFPI. | |
Retrocopy | --IYNHTE-MVKAVMLGFH*KMKSVYAHFPID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 84 .20 RPM |
SRP017611_kidney | 0 .00 RPM | 197 .34 RPM |
SRP017611_liver | 0 .00 RPM | 143 .12 RPM |
SRP040447_lung | 0 .00 RPM | 176 .34 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 206 .16 RPM |