RetrogeneDB ID: | retro_itri_313 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393283.1:25400324..25400898(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL9 | ||
Ensembl ID: | ENSSTOG00000002077 | ||
Aliases: | None | ||
Description: | ribosomal protein L9 [Source:HGNC Symbol;Acc:10369] |
Percent Identity: | 85.05 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MKTILSNQTVD-IPENVDITLKGRTVIVKGPRGTLR-RDFNHINVELSLLGKKKKRLRVDKWWGNRKELA |
MKTIL.NQT...IPENVDITLKG.TVIVKGPR.T...RDFNHINVELSLL.KKKKRL.VDK.WGNRKELA | |
Retrocopy | MKTILINQTEP<IPENVDITLKGCTVIVKGPRETPG<RDFNHINVELSLLEKKKKRL*VDK*WGNRKELA |
Parental | TVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQ |
TV.TICSHVQ.MIKG.TLGF.YK.RSVYAHFPIN.VIQEN.SLVEI.NFLGEKYI..V.MRTGVACSVSQ | |
Retrocopy | TVCTICSHVQDMIKGITLGFCYKVRSVYAHFPINLVIQENRSLVEI*NFLGEKYIHKVQMRTGVACSVSQ |
Parental | AQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQADE |
AQK.ELILEGND.EL.SNSAALIQQATTVKNKDIRKF.DGIYVS.KGT.QQADE | |
Retrocopy | AQKHELILEGNDFELASNSAALIQQATTVKNKDIRKFWDGIYVSGKGTMQQADE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |